View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_high_3 (Length: 413)
Name: NF16347_high_3
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 32695412 - 32695796
Alignment:
| Q |
12 |
atgaagagcaaaactgcaaaattgttgaagcaaatcattgccggtttaaccgcaatgacaaagtcaaaaactatggctataaagtccaaaacaaatgcca |
111 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32695412 |
atgaagagcaaaacagcaaaattgttgaagcaaatcattgccggtttaaccgcaatgacaaagtcaaaaactatggctataaagtccaaaacaaatgccg |
32695511 |
T |
|
| Q |
112 |
tcaaagctcgtttgattatattctcactcatgaagaacaaaaagtttcttatgagttcaatttcagataagtttcattctgtttgggggagccattctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32695512 |
tcaaagctcgtttgattatattctcactcatgaagaacaaaaagtttcttatgagttcaatttcagataagtttcattctgtttgggggagccattctca |
32695611 |
T |
|
| Q |
212 |
tcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32695612 |
tcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgatcacaataaagccctagttgtgtataacaacaatgctcatcatcgc |
32695711 |
T |
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| Q |
312 |
acttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
396 |
Q |
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| T |
32695712 |
acttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
32695796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 32679349 - 32679721
Alignment:
| Q |
12 |
atgaagagcaaaactgcaaaattgttgaagcaaatcattgccggtttaaccgcaatgacaaagtcaaaaactatggctataaagtccaaaacaaatgcca |
111 |
Q |
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||||||| |||||| ||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| |
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| T |
32679349 |
atgaagaacaaaacagcaaatttgttaaagcaaatcattgccgatttaacctcaatgacaaagtcaaaaactatgtctttaaagtccaaaacaaatacca |
32679448 |
T |
|
| Q |
112 |
tcaaagctcgtttgattatattctcactcatgaagaacaaaaagtttcttatgagttcaatttcagataagtttcattctgtttgggggagccattctca |
211 |
Q |
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|||||||||||| |||||| ||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32679449 |
tcaaagctcgttcaattatactctcagtcatgaa---caaaaagttccttatgagttcaatttcagagaagtttcattctgtttgggggagccattctca |
32679545 |
T |
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| Q |
212 |
tcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgc |
311 |
Q |
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| T |
32679546 |
tcatcacttcaaagaagattgtttaattgaagaa---ggtggcaattttgatgatcacaataaagccctagttgtgtataacaacaaaggtca------c |
32679636 |
T |
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| Q |
312 |
acttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
396 |
Q |
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| T |
32679637 |
agttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatg |
32679721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 32686447 - 32686606
Alignment:
| Q |
69 |
acaaagtcaaaaactatggctataaagtccaaaacaaatgccatcaaagctcgtttgattatattctcactcatgaagaacaaaaagtttcttatgagtt |
168 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
32686447 |
acaaagtccaaaactatggcattaaagtccaaaacaaatgccatcaaagctcgtttaattatattctcactcatgaagaataaaaagttccttatgagtt |
32686546 |
T |
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| Q |
169 |
caatttcagataagtttcattctgtttgggggagccattctcatcgtcactccaaagaag |
228 |
Q |
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| T |
32686547 |
caatttcagataagtttcattctgtttgggggagtcattctcatcatcactccaaagaag |
32686606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 32686606 - 32686744
Alignment:
| Q |
249 |
ggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaag |
348 |
Q |
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||||| |||| |||||| || || | |||| | ||||||||| ||||||||||||| ||||||||| || |||| |||||||||||||||||||| |
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| T |
32686606 |
ggtggcaattatgatgatcataatagagccatggttgtgtattacaacaatgctca------cacttatgaggcgttgcgaaatccaagtgaaacacaag |
32686699 |
T |
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| Q |
349 |
ttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
396 |
Q |
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|||| |||| ||||||| |||||||||||| ||| | ||||||||| |
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| T |
32686700 |
ttgtggatg---aacaagatcaagaagatggacatggtggttactatg |
32686744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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