View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_high_5 (Length: 373)
Name: NF16347_high_5
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 33225018 - 33225234
Alignment:
| Q |
4 |
ttgtgtcggtagttagtctcaccttgtctatgaatgagtttaatattttctaagagatgaatgagattaatgttaaatacataagagagataactcatat |
103 |
Q |
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| T |
33225018 |
ttgtgtcggtagttagtctcaccttgtctatgaatgagtttaatattttctaagagatgaatgagattaatgttagatacataagagagataactcatat |
33225117 |
T |
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| Q |
104 |
atctcatgacttaagattttagatggagatatgacgtcttcctcttttgtggtccataagcattggtcagtcgttacttcatatactcaccagagctctc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33225118 |
atctcatgacttaagattttagatggagatatgacgtcttcctcttttgtggtccataagcattggtcagtcgttacttcatatactcaccagagctctc |
33225217 |
T |
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| Q |
204 |
caacaagtggtatcaga |
220 |
Q |
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||||||||||||||||| |
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| T |
33225218 |
caacaagtggtatcaga |
33225234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 33225232 - 33225331
Alignment:
| Q |
255 |
agaaaatgtgattgaccaatcccatgtccctagagcccttgttgctcatagcgctccactgactcctaagtaagtggcattagagtcttgatttaggttt |
354 |
Q |
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| T |
33225232 |
agaaaatgtgattgaccaatcccatatccctagagcccttgttgctcatagcgctcccctgactcctaagtaagtggcattagagtcttgatttaggttt |
33225331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 45100228 - 45100289
Alignment:
| Q |
72 |
aatgttaaatacataagagagataactcatatatctcatgacttaagattttagatggagat |
133 |
Q |
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| T |
45100228 |
aatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagat |
45100289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 40842544 - 40842492
Alignment:
| Q |
100 |
atatatctcatgacttaagattttagatggagatatgacgtcttcctcttttgt |
153 |
Q |
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| T |
40842544 |
atatatctaatgtcttaa-attttagatggagatgtgacatcttcctcttttgt |
40842492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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