View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_1 (Length: 444)
Name: NF16347_low_1
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 39291877 - 39291445
Alignment:
| Q |
8 |
attattctgtgaggcggatatgttatttag---gcaagtttttggaacataaat-----gaacttctttgtatggagtttgactctactatttatagaaa |
99 |
Q |
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| T |
39291877 |
attattctgtgaggcagatatgttatttagtaggcaagtttttggaacataaattaaatgaacttttttgtatggagtttgactctactatttatagaaa |
39291778 |
T |
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| Q |
100 |
agactaagaaactactaactcatacaatgcacgggtgtcaatgtattcgaacttcctttggagtctcttctgcaagttt-------gtactttgaatttt |
192 |
Q |
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| T |
39291777 |
aaactaagaaactactaactcatacaatgcacgggtgtcaatgtattctaacttcctttggagtctcttctgcaagttttcttcgtgtactttgaatttt |
39291678 |
T |
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| Q |
193 |
gaatgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggatatggaagttttaagaagttatgtagctcaaagttttgaatgtcc |
292 |
Q |
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| T |
39291677 |
gaatgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggatatggaagttttaagaagttatgt-------------------cc |
39291597 |
T |
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| Q |
293 |
ctggattatgtctttgaacttcttgacattgatatttgaaataacgactttcgagctccgacaacaaaatcatttctttttggtctttaaggaagatgag |
392 |
Q |
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| T |
39291596 |
ctggattatgtctttgaacttcttgacattggtatttgaaataacgactttcgagctccgacaacaaaatcatttctttttggtctttaaggaagatgag |
39291497 |
T |
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| Q |
393 |
cctaacttgctcgaaaacatttgtgtgtaactggtgcccctaaatgttactt |
444 |
Q |
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| T |
39291496 |
cctaactcactcgaaaacatttgtgtgtaactggtgcccctaaatgttactt |
39291445 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 29456818 - 29456757
Alignment:
| Q |
39 |
caagtttttggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaa |
100 |
Q |
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| T |
29456818 |
caagtttttggaacgaaaataaactcctttgcatgaagtttgattctactatttatagaaaa |
29456757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 40945572 - 40945507
Alignment:
| Q |
37 |
ggcaagtttt-tggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaag |
101 |
Q |
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| T |
40945572 |
ggcaagttttgtggaacataaatgaactcctttgcatgaagtttgattctactattcataaaaaag |
40945507 |
T |
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