View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_10 (Length: 317)
Name: NF16347_low_10
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 5414976 - 5415275
Alignment:
| Q |
1 |
ttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5414976 |
ttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacaaaaa |
5415075 |
T |
|
| Q |
101 |
nntttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5415076 |
aatttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaa |
5415175 |
T |
|
| Q |
201 |
caatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5415176 |
caatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
5415275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 5388562 - 5388731
Alignment:
| Q |
131 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
230 |
Q |
| |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5388562 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5388661 |
T |
|
| Q |
231 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
300 |
Q |
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|| ||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
5388662 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttc |
5388731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 5402371 - 5402540
Alignment:
| Q |
131 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
230 |
Q |
| |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5402371 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5402470 |
T |
|
| Q |
231 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
300 |
Q |
| |
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| T |
5402471 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttc |
5402540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 5396660 - 5396840
Alignment:
| Q |
120 |
ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca |
219 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| | ||||| |||||||||||| | || || ||| |
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|
| T |
5396660 |
ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgaca |
5396759 |
T |
|
| Q |
220 |
cttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
300 |
Q |
| |
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||||||||||| || ||| ||||||| | |||||||||| || | || ||| | ||||| || ||||||||||||||| |
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|
| T |
5396760 |
cttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttc |
5396840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 5408112 - 5407992
Alignment:
| Q |
126 |
atagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcct |
225 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | | ||||||||||||| |||| | |||| | ||||| |||||||||||| | || || ||||||||| |
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| T |
5408112 |
atagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcct |
5408013 |
T |
|
| Q |
226 |
ggaattgcatttgcttgggga |
246 |
Q |
| |
|
||||||||| ||| ||||||| |
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| T |
5408012 |
ggaattgcaattgtttgggga |
5407992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 5398805 - 5398834
Alignment:
| Q |
262 |
ttgatttactctgttggtcacatttctggt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5398805 |
ttgatttactctgttggtcacatttctggt |
5398834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 5398750 - 5398798
Alignment:
| Q |
198 |
taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga |
246 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||| | |||||| |
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|
| T |
5398750 |
taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga |
5398798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 36267625 - 36267726
Alignment:
| Q |
199 |
aacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatt |
298 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| || ||| ||||||| | |||| ||||| || |||||||| |||||||||| ||||||||||||| |
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| T |
36267625 |
aacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatt |
36267724 |
T |
|
| Q |
299 |
tc |
300 |
Q |
| |
|
|| |
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| T |
36267725 |
tc |
36267726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 36262476 - 36262565
Alignment:
| Q |
211 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttc |
300 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||||||| | ||| | |||| |||||||||||| ||||||| || ||||||||||||||| |
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|
| T |
36262476 |
gtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttc |
36262565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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