View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_11 (Length: 316)
Name: NF16347_low_11
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 5954942 - 5954656
Alignment:
| Q |
20 |
ctcaggacctcaaccagcacctagaatatggatcagacgcaggtcgaacgctaatagagttgcagacaaacggcgccagcaactgatacattgtgtaact |
119 |
Q |
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| T |
5954942 |
ctcaggacctcaaccagcacctagaatatggatcaaacgcaggtcgaacgctaatagagttgcagacaaacggcgccagcaactgatacattgtgtaact |
5954843 |
T |
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| Q |
120 |
gagctaaaagaggctggaatcaagttcaagaaaaggaagaccgatcgcttctgggatattaaatttaaggacggtattctgcgtattccgagactcttga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954842 |
gagctaaaagaggctggaatcaagttcaagaaaaggaagaccgatcgcttctgggatattaaatttaaggacggtattctgcgtattccgagactcttga |
5954743 |
T |
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| Q |
220 |
tccatgatggaacaaaatctctgtttctaaacctcattgcatttgagcagtgtcatcttgattgcagtaatgacattacatcctatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5954742 |
tccatgatggaacaaaatctctgtttctaaacctcattgcatttgagcagtgtcatcttgattgcagcaatgacattacatcctatg |
5954656 |
T |
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