View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_13 (Length: 259)
Name: NF16347_low_13
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 21371509 - 21371742
Alignment:
| Q |
16 |
ttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattagg |
115 |
Q |
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| T |
21371509 |
ttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattagg |
21371608 |
T |
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| Q |
116 |
tccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggttt |
215 |
Q |
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| T |
21371609 |
tccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggttt |
21371708 |
T |
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| Q |
216 |
atgattggtttctctttggcaacatttgtttcat |
249 |
Q |
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| T |
21371709 |
atgattggtttctctttggcaacatttgtttcat |
21371742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 21386048 - 21385815
Alignment:
| Q |
16 |
ttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattagg |
115 |
Q |
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| T |
21386048 |
ttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattagg |
21385949 |
T |
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| Q |
116 |
tccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggttt |
215 |
Q |
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| T |
21385948 |
tccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggttt |
21385849 |
T |
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| Q |
216 |
atgattggtttctctttggcaacatttgtttcat |
249 |
Q |
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| T |
21385848 |
atgattggtttctctttggcaacatttgtttcat |
21385815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 36199810 - 36199932
Alignment:
| Q |
123 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
221 |
Q |
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| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
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| Q |
222 |
ggtttctctttggcaacatttgtttc |
247 |
Q |
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| T |
36199907 |
ggtttgtctttagcaacttttgtttc |
36199932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 48674302 - 48674242
Alignment:
| Q |
187 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttc |
247 |
Q |
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| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttc |
48674242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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