View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_15 (Length: 238)
Name: NF16347_low_15
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28674793 - 28675022
Alignment:
| Q |
1 |
cctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28674793 |
cctccaatcagcagattggtcttggtaaagagtaaaattggagagataaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggca |
28674892 |
T |
|
| Q |
101 |
tcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttg |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28674893 |
tcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatatgtgttggaattccatgatttatcacttgaaagaatccccatttctcacttg |
28674992 |
T |
|
| Q |
201 |
cattttgaacttttctcacaacttcatctc |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
28674993 |
cattttgaacttttctcacaacttcatctc |
28675022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28670649 - 28670878
Alignment:
| Q |
1 |
cctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggca |
100 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28670649 |
cctccaatcagcagattggtctaggtagagagtaaaattggaaagataaacaacttttttggtaagatcacgggtgtagtactccttcctcaccttggca |
28670748 |
T |
|
| Q |
101 |
tcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28670749 |
tcttgttggtgaaatctacaagttccattgatcatctcatccaaaatctgtgttggaattccatgatttattacttgaaagaatccccatttctcacttg |
28670848 |
T |
|
| Q |
201 |
cattttgaacttttctcacaacttcatctc |
230 |
Q |
| |
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||||| |||||||||| ||||||||||||| |
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| T |
28670849 |
catttcgaacttttcttacaacttcatctc |
28670878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28642066 - 28642295
Alignment:
| Q |
1 |
cctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggca |
100 |
Q |
| |
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|||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | | |
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| T |
28642066 |
cctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttagga |
28642165 |
T |
|
| Q |
101 |
tcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttg |
200 |
Q |
| |
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|| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28642166 |
tcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatg |
28642265 |
T |
|
| Q |
201 |
cattttgaacttttctcacaacttcatctc |
230 |
Q |
| |
|
|||||| || || ||||||||||||||||| |
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| T |
28642266 |
cattttcaagttgtctcacaacttcatctc |
28642295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28650927 - 28651156
Alignment:
| Q |
1 |
cctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggca |
100 |
Q |
| |
|
|||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | | |
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| T |
28650927 |
cctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttagga |
28651026 |
T |
|
| Q |
101 |
tcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttg |
200 |
Q |
| |
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|| ||||| ||||||||||||||||| |||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28651027 |
tcctgttgatgaaatctacaagttcctttgatcatctcatgcaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatg |
28651126 |
T |
|
| Q |
201 |
cattttgaacttttctcacaacttcatctc |
230 |
Q |
| |
|
|||||| || || ||||||||||||||||| |
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|
| T |
28651127 |
cattttcaagttgtctcacaacttcatctc |
28651156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 28696176 - 28696382
Alignment:
| Q |
23 |
tggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaag |
122 |
Q |
| |
|
||||||||| || |||| |||| |||||||||||| ||| || |||| | || || ||||| || |||||||||||||||||||| ||||||||||||| |
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| T |
28696176 |
tggtaaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttctcaccttggcatcttgttgatgaaatctacaag |
28696275 |
T |
|
| Q |
123 |
ttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaac |
222 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28696276 |
ttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaattctcacttgcattttgaacttttctcacaac |
28696375 |
T |
|
| Q |
223 |
ttcatct |
229 |
Q |
| |
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||||||| |
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| T |
28696376 |
ttcatct |
28696382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 28691291 - 28691498
Alignment:
| Q |
23 |
tggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaag |
122 |
Q |
| |
|
||||||||| || |||| |||| ||||||||||| ||| | ||||||| ||||| ||||| ||||| ||| | |||||||||| ||||||||||||| |
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| T |
28691291 |
tggtaaagactataattagaaacgtaaacaactttcttgttaggatcacgtgtgtaatactctttccttaccataacatcttgttgatgaaatctacaag |
28691390 |
T |
|
| Q |
123 |
ttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcattttgaacttttctcacaac |
222 |
Q |
| |
|
|||| |||||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| | |
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|
| T |
28691391 |
ttcctttgatcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccacttctcacatgcattttcaacttttctcacagc |
28691490 |
T |
|
| Q |
223 |
ttcatctc |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
28691491 |
ttcatctc |
28691498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 28717507 - 28717651
Alignment:
| Q |
36 |
aattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcat |
135 |
Q |
| |
|
|||| |||| |||||||||||| ||| | |||||| |||| ||||| ||||| ||| | |||||||||| ||||||||||||||||| |||||||| |
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| T |
28717507 |
aattagaaatataaacaactttcttgttaggatcacatatgtaatactctttccttaccctaacatcttgttgatgaaatctacaagttcctttgatcat |
28717606 |
T |
|
| Q |
136 |
gtcatccaaaatatgtgttggaattccatgatttattacttgaaa |
180 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| |
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|
| T |
28717607 |
ctcatccaaaacatgagttgaaattccatgatttattacttgaaa |
28717651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 41238565 - 41238469
Alignment:
| Q |
98 |
gcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttct |
194 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||| |||||||| || ||||| || |||||||| |||| |
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|
| T |
41238565 |
gcatcttgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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