View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16347_low_16 (Length: 237)

Name: NF16347_low_16
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16347_low_16
NF16347_low_16
[»] chr3 (4 HSPs)
chr3 (6-221)||(44523219-44523433)
chr3 (9-70)||(16861075-16861136)
chr3 (9-70)||(17561705-17561766)
chr3 (17-70)||(42760283-42760336)
[»] chr8 (4 HSPs)
chr8 (9-70)||(40075078-40075139)
chr8 (9-70)||(20859670-20859731)
chr8 (9-70)||(39491053-39491114)
chr8 (22-67)||(35551615-35551660)
[»] chr2 (3 HSPs)
chr2 (9-71)||(36652851-36652913)
chr2 (9-71)||(10334381-10334443)
chr2 (1-70)||(14002465-14002534)
[»] chr7 (6 HSPs)
chr7 (9-70)||(37345169-37345230)
chr7 (9-70)||(41734137-41734198)
chr7 (9-70)||(5541609-5541670)
chr7 (9-70)||(14102414-14102475)
chr7 (9-70)||(14412431-14412492)
chr7 (6-46)||(45256957-45256997)
[»] chr6 (1 HSPs)
chr6 (9-70)||(24719887-24719948)
[»] chr4 (4 HSPs)
chr4 (9-70)||(30703964-30704025)
chr4 (9-70)||(9013935-9013996)
chr4 (9-70)||(40061047-40061108)
chr4 (6-70)||(8111478-8111542)
[»] chr1 (2 HSPs)
chr1 (9-70)||(21140971-21141032)
chr1 (22-70)||(38127569-38127617)
[»] chr5 (2 HSPs)
chr5 (9-70)||(38971689-38971750)
chr5 (17-70)||(38408541-38408594)
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-70)||(18951-19012)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 44523433 - 44523219
Alignment:
Q  6 caattaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaatgctaattttctatatttccctcccaaaaggtaga 105  Q
    |||||||||||||||||| ||||| |||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44523433 caattaactgtcgaaggatatttaggtaaattactcgtgtgtttcaacctaaccaaatgtgtcaatggtaattttctatatttccctcccaaaaggtaga 44523334  T
Q  106 gaataatttgtccaattattatatcccctacggctacgtatcttcgacgttaatgatgcatcgacccatccgtacgtacccccagcctagagcgtaggga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  44523333 gaataatttgtccaattattatatcccctacggctacgtatcttcgacgttaatgatgcatcgacccatccgtacgta-ccccggcctagagcgtaggga 44523235  T
Q  206 gtgatcaccatcattg 221  Q
    ||||||||||||||||    
T  44523234 gtgatcaccatcattg 44523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 16861136 - 16861075
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||||||| || |||||| |||||||| || ||||| |||||| |||||||||||||||    
T  16861136 ttaactgtcgaggggcatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaa 16861075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 17561766 - 17561705
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||||| | ||||||||| |||||||| || ||||| |||||| || ||||||||||||    
T  17561766 ttaactgtcaagggacatttaggtaaattactcgtgtgtctcagccaaatcaaatgtgtcaa 17561705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 42760283 - 42760336
Alignment:
Q  17 cgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||||| |||||| |||||||| || ||||| |||||| |||||||||||||||    
T  42760283 cgaagggcatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaa 42760336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 40075139 - 40075078
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  40075139 ttaactgtcgaagggcatttaagtaaattactcgtgtgtctcagcctaaccaaatgtgtcaa 40075078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 20859670 - 20859731
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||||||| ||||||||| |||||||  || ||||| |||||| |||||||||||||||    
T  20859670 ttaactgtcgagggacatttaggtaaattcctcgtgtgtctcagccaaaccaaatgtgtcaa 20859731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 39491114 - 39491053
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| |||| |||||||| |||||||| || ||||| ||||| ||||||||||||||||    
T  39491114 ttaactgccgaaagacatttatgtaaattactcgtgtgtctcagcttaaccaaatgtgtcaa 39491053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 35551660 - 35551615
Alignment:
Q  22 gacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgt 67  Q
    |||||||| |||||||| || ||||| |||||||||||||||||||    
T  35551660 gacatttaggtaaattactcgtgtgtctcagcctaaccaaatgtgt 35551615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 36652913 - 36652851
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaat 71  Q
    ||||||| ||| |||||||||||||||||| || ||||| |||||| ||||||||||||||||    
T  36652913 ttaactgccgatggacatttaagtaaattactcgtgtgtctcagccaaaccaaatgtgtcaat 36652851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 10334443 - 10334381
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaat 71  Q
    ||||||| ||| ||||||||| |||||||| |||||||| || || |||||||||||||||||    
T  10334443 ttaactgccgatggacatttaggtaaattactcatgtgtctctgcttaaccaaatgtgtcaat 10334381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14002534 - 14002465
Alignment:
Q  1 ttcagcaattaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| ||||||| ||| |||||||| ||||| ||| || ||| | |||||| |||||||||||||||    
T  14002534 ttcagcagttaactgccgagggacatttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaa 14002465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 37345169 - 37345230
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| ||||||||||||| |||||||| || ||||| ||||||||||||||| ||||||    
T  37345169 ttaactgccgaaggacatttaggtaaattactcgtgtgtctcagcctaaccaaatatgtcaa 37345230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 41734198 - 41734137
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| |||||| ||||||| ||||||| || || || ||||||||||||||||||||||    
T  41734198 ttaactgccgaagggcatttaaataaattactcgtgcgtctcagcctaaccaaatgtgtcaa 41734137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 5541609 - 5541670
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| | |||| |||||| |||||||| || ||||| |||||| |||||||||||||||    
T  5541609 ttaactgccaaagggcatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaa 5541670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 14102414 - 14102475
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||||||| || ||||| ||||| ||| |||||| | |||||| |||||||||||||||    
T  14102414 ttaactgtcgaggggcatttgagtaatttactcatgtttctcagccaaaccaaatgtgtcaa 14102475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 14412431 - 14412492
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||||||| || ||||| ||||| ||| |||||| | |||||| |||||||||||||||    
T  14412431 ttaactgtcgaggggcatttgagtaatttactcatgtttctcagccaaaccaaatgtgtcaa 14412492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 45256997 - 45256957
Alignment:
Q  6 caattaactgtcgaaggacatttaagtaaattattcatgtg 46  Q
    |||||||||| ||||||||||||| |||||||| |||||||    
T  45256997 caattaactgccgaaggacatttaggtaaattactcatgtg 45256957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 24719948 - 24719887
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| ||||||||||||| |||||||| || ||||| ||||||||| ||||||||||||    
T  24719948 ttaactgccgaaggacatttaggtaaattagtcgtgtgtctcagcctaatcaaatgtgtcaa 24719887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 30704025 - 30703964
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| |||| | ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  30704025 ttaactgccgaatggcatttaagtaaattactcgtgtgtctcagcctaaccaaatgtgtcaa 30703964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 9013935 - 9013996
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| ||||||  ||||| |||||||| || ||||| ||||||||||||||||||||||    
T  9013935 ttaactgccgaagggaatttaggtaaattactcgtgtgtctcagcctaaccaaatgtgtcaa 9013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 40061108 - 40061047
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| ||| || |||||| |||||||| || |||||||||||| ||| |||||||||||    
T  40061108 ttaactgccgaggggcatttaggtaaattactcgtgtgtttcagccaaactaaatgtgtcaa 40061047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 8111478 - 8111542
Alignment:
Q  6 caattaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||||||||| ||| |||||||||  ||||||| || ||| | |||||| |||||||||||||||    
T  8111478 caattaactgccgatggacatttagataaattactcgtgtatctcagccaaaccaaatgtgtcaa 8111542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 21141032 - 21140971
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||| |||||||||||||||| |||||||| || ||||| |||||| |||||||||||||||    
T  21141032 ttaattgtcgaaggacatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaa 21140971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 38127569 - 38127617
Alignment:
Q  22 gacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||||||| |||||||| || ||||| ||| ||||||||||||||||||    
T  38127569 gacatttaggtaaattactcgtgtgtctcaacctaaccaaatgtgtcaa 38127617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 38971689 - 38971750
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| |||||| |||||| |||||||| || ||||| ||| ||||||||||||||||||    
T  38971689 ttaactgccgaagggcatttaggtaaattagtcgtgtgtctcaacctaaccaaatgtgtcaa 38971750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 38408541 - 38408594
Alignment:
Q  17 cgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    |||||| |||||| |||||||| || ||||| |||||| |||||||||||||||    
T  38408541 cgaagggcatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaa 38408594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 18951 - 19012
Alignment:
Q  9 ttaactgtcgaaggacatttaagtaaattattcatgtgtttcagcctaaccaaatgtgtcaa 70  Q
    ||||||| | |||| |||||| |||||||| |  ||||| ||||||||||||||||||||||    
T  18951 ttaactgccaaagggcatttaggtaaattactagtgtgtctcagcctaaccaaatgtgtcaa 19012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University