View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_2 (Length: 442)
Name: NF16347_low_2
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 54972055 - 54971654
Alignment:
| Q |
18 |
atttattagcctaaagcaatcaagaaaaccacaaaatataagttgtagctttttctttaatgcaggttatgctgtttaatattatggaccaataagcaat |
117 |
Q |
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| T |
54972055 |
atttattagcctaaagcaatcaagaaaaccacaaaatataagttgtagctttttctttaatgcaggttatg---------------gaccaataagcaat |
54971971 |
T |
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| Q |
118 |
ttagtgtgatgatctaaactatgtttttcatgaagtaggatcccaggagcaaggatattgaagatgtcttgattctttctggggatcacctctaccgtat |
217 |
Q |
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| T |
54971970 |
taagtgtgatgatctaaactatgtttttcatgaagtaggatcccaggagcaaggatattgaggatgttttgattctttctggggatcacctctaccgtat |
54971871 |
T |
|
| Q |
218 |
ggactatatggactttgttaaagtagggatcatgtcaaccaattaagcaatattctctctttcagttcagtagattaattcaaattattgactcttaaga |
317 |
Q |
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| T |
54971870 |
ggactatatggactttgttaaagtagggatcatgtcaaccaattaagcaatattctctctttcagttcagtagattaattcaaattattgactcttaaga |
54971771 |
T |
|
| Q |
318 |
cgttttccaggatcatcgagagagcggtgcagatatcactctttcttgtctgccaatggatgacaggtaagttacttccccgaagtagtaagattcatgt |
417 |
Q |
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| T |
54971770 |
cgttttccaggatcatcgagagagcggtgcagatatcactctttcttgtctgccaatggatgacaggtaagttacttccccgaagtagtaagattcatgt |
54971671 |
T |
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| Q |
418 |
catttagtgttcatctc |
434 |
Q |
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| T |
54971670 |
catttagtgttcatctc |
54971654 |
T |
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