View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16347_low_5 (Length: 393)
Name: NF16347_low_5
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 177 - 378
Target Start/End: Original strand, 44999755 - 44999958
Alignment:
| Q |
177 |
tcactaatgtttcaacaaattacttgtttattttgatttagatgaaatgctccaacttgt--tggaaaggctccactgatcagaagcaatgtcttcagct |
274 |
Q |
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| T |
44999755 |
tcactaatgtttcaacaaattacttgtttattttgatttagatgaaatgctccaacttgtgttggaaaggctccactgatcagaagcaatgtcttcagct |
44999854 |
T |
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| Q |
275 |
gcagatgaaatgtcaccacattttgctacaatccttacactctctatcaactcttttgttctagcctcttgtgccaaaatttccatcaactgttctggac |
374 |
Q |
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| T |
44999855 |
gcagatgaaatgtcaccacattttgctacaatccttacactctctatcaactcttttgttctagcctcttgtgccaaaatttccatcaactgttctggac |
44999954 |
T |
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| Q |
375 |
taat |
378 |
Q |
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|||| |
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| T |
44999955 |
taat |
44999958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 44999579 - 44999699
Alignment:
| Q |
1 |
aaaaattacagtattctacaacacgcagatacacagaaattctacaatgttatatgaaaaagatctacattgaattttaaagaagaaacataatatgata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44999579 |
aaaaattacagtattctacaacacgcagatacacagaaattctacaatgttatatgaaaaagatctacattgaattttaaagaagaaacattatatgata |
44999678 |
T |
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| Q |
101 |
catacataattgcatacatat |
121 |
Q |
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| T |
44999679 |
catacataattgcatacatat |
44999699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 18245762 - 18245685
Alignment:
| Q |
288 |
caccacattttgctacaatccttacactctctatcaactcttttgttctagcctcttgtgccaaaatttccatcaact |
365 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| || ||| | ||||||||| |||||| |||| ||||| |
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| T |
18245762 |
caccacatttggctacaatcctcacactctctatcaactccttggttgaaacctcttgtgacaaaatctccaacaact |
18245685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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