View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16347_low_8 (Length: 367)
Name: NF16347_low_8
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16347_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 25 - 357
Target Start/End: Original strand, 3041812 - 3042145
Alignment:
| Q |
25 |
atacaagagtgccacttctatgtttgtaattttttctttgaattctacaattcacaaaatgaaacagatataggaattattgaacgtccacaaataagta |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3041812 |
atacaagagtgccacttctatgttcgtaattttttctttgaattctacaattcacaaaatgaaacagatataggaattattgaacgtccacaaataagta |
3041911 |
T |
|
| Q |
125 |
atattattggaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
224 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3041912 |
atattattcgaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
3042011 |
T |
|
| Q |
225 |
tactgcagaccccatgcattttgttacttaactctattatctggctggtaaattattggtagttagtaacgttgtcgttcagat-nnnnnnnnctttatg |
323 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3042012 |
tactgtagaccccatgcattttgttacttaactctattatctggctggtaaattaatggtagttagtaacgttgtcgttcagataaaaaaaaactttatg |
3042111 |
T |
|
| Q |
324 |
tatacatcataaattcatagtcatatccagaata |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3042112 |
tatacatcataaattcatagtcatatccagaata |
3042145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University