View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16347_low_9 (Length: 342)

Name: NF16347_low_9
Description: NF16347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16347_low_9
NF16347_low_9
[»] chr5 (10 HSPs)
chr5 (12-326)||(244808-245122)
chr5 (12-326)||(29949587-29949901)
chr5 (12-326)||(29951225-29951539)
chr5 (12-123)||(38936717-38936828)
chr5 (15-206)||(16780615-16780804)
chr5 (12-88)||(21352695-21352771)
chr5 (12-76)||(21352606-21352670)
chr5 (31-140)||(23660940-23661049)
chr5 (31-140)||(23797521-23797630)
chr5 (37-186)||(258977-259125)
[»] chr4 (15 HSPs)
chr4 (12-326)||(15018010-15018324)
chr4 (12-326)||(15019650-15019964)
chr4 (12-326)||(13518327-13518644)
chr4 (12-325)||(9398987-9399303)
chr4 (12-326)||(39488517-39488834)
chr4 (15-198)||(13517922-13518105)
chr4 (12-230)||(11098499-11098718)
chr4 (12-230)||(42872895-42873112)
chr4 (12-88)||(46690508-46690584)
chr4 (12-230)||(21377201-21377418)
chr4 (282-326)||(9166926-9166970)
chr4 (12-230)||(18281212-18281429)
chr4 (111-209)||(30874982-30875080)
chr4 (14-85)||(22473681-22473750)
chr4 (22-186)||(24663929-24664095)
[»] chr1 (11 HSPs)
chr1 (12-326)||(36233308-36233622)
chr1 (12-326)||(24157420-24157737)
chr1 (15-326)||(20189164-20189478)
chr1 (12-326)||(20190797-20191114)
chr1 (8-281)||(48462802-48463074)
chr1 (12-207)||(36233845-36234040)
chr1 (10-222)||(48463831-48464040)
chr1 (12-310)||(20759106-20759397)
chr1 (12-230)||(40553903-40554120)
chr1 (12-85)||(31390149-31390221)
chr1 (12-85)||(40554666-40554738)
[»] chr7 (9 HSPs)
chr7 (12-326)||(9647302-9647619)
chr7 (12-326)||(7842676-7842993)
chr7 (15-326)||(9595803-9596117)
chr7 (15-326)||(9646766-9647080)
chr7 (12-326)||(40998586-40998903)
chr7 (12-282)||(23446662-23446932)
chr7 (12-326)||(41000445-41000763)
chr7 (12-55)||(24790122-24790165)
chr7 (12-55)||(24790156-24790199)
[»] chr2 (10 HSPs)
chr2 (12-326)||(22300263-22300580)
chr2 (12-326)||(18535669-18535986)
chr2 (12-304)||(24806673-24806969)
chr2 (12-304)||(24808529-24808825)
chr2 (12-155)||(31974034-31974177)
chr2 (12-136)||(22299690-22299814)
chr2 (12-230)||(44793275-44793492)
chr2 (12-69)||(24806089-24806147)
chr2 (12-85)||(44792615-44792687)
chr2 (107-136)||(31973965-31973994)
[»] chr8 (8 HSPs)
chr8 (12-326)||(8366107-8366424)
chr8 (12-326)||(17278042-17278358)
chr8 (12-201)||(17277409-17277598)
chr8 (12-164)||(6778187-6778338)
chr8 (12-230)||(17857163-17857380)
chr8 (12-55)||(17277677-17277720)
chr8 (12-230)||(23016561-23016778)
chr8 (12-85)||(23016372-23016444)
[»] chr3 (11 HSPs)
chr3 (12-326)||(25531636-25531953)
chr3 (12-326)||(5554158-5554475)
chr3 (12-326)||(16346634-16346951)
chr3 (12-326)||(23460202-23460519)
chr3 (12-326)||(47418343-47418660)
chr3 (12-281)||(5553198-5553467)
chr3 (12-232)||(16022616-16022836)
chr3 (12-326)||(47566476-47566792)
chr3 (71-207)||(32570538-32570674)
chr3 (12-188)||(2683485-2683660)
chr3 (60-106)||(25532821-25532867)
[»] scaffold0025 (1 HSPs)
scaffold0025 (12-326)||(54856-55174)
[»] scaffold0026 (2 HSPs)
scaffold0026 (12-326)||(86583-86896)
scaffold0026 (12-115)||(643-746)
[»] scaffold0013 (1 HSPs)
scaffold0013 (12-326)||(241046-241363)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-304)||(473-769)
[»] scaffold0146 (1 HSPs)
scaffold0146 (12-183)||(31591-31762)
[»] scaffold0269 (2 HSPs)
scaffold0269 (145-326)||(1770-1954)
scaffold0269 (12-90)||(1973-2051)
[»] scaffold0096 (1 HSPs)
scaffold0096 (12-123)||(22399-22510)
[»] scaffold0021 (2 HSPs)
scaffold0021 (12-131)||(17657-17776)
scaffold0021 (12-131)||(27188-27307)
[»] scaffold0094 (1 HSPs)
scaffold0094 (12-230)||(13365-13582)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-230)||(5220-5437)
[»] scaffold0180 (1 HSPs)
scaffold0180 (12-230)||(11265-11481)
[»] scaffold0139 (1 HSPs)
scaffold0139 (12-230)||(4225-4442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-230)||(375180-375392)
[»] chr6 (2 HSPs)
chr6 (12-51)||(12037064-12037103)
chr6 (12-49)||(12037016-12037053)
[»] scaffold0359 (1 HSPs)
scaffold0359 (12-56)||(8902-8946)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 245122 - 244808
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  245122 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 245023  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  245022 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 244923  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  244922 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 244823  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  244822 tagccttcacaaatc 244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 29949587 - 29949901
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  29949587 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 29949686  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  29949687 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaa 29949786  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29949787 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 29949886  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  29949887 tagccttcacaaatc 29949901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 29951225 - 29951539
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  29951225 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 29951324  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  29951325 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaa 29951424  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29951425 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 29951524  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  29951525 tagccttcacaaatc 29951539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 38936717 - 38936828
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  38936717 aagaataataaagtcattgtgaaataaaagaaccaaatcaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctata 38936816  T
Q  112 tctggagctctg 123  Q
    | ||||||||||    
T  38936817 tatggagctctg 38936828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 16780615 - 16780804
Alignment:
Q  15 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatct 114  Q
    |||||||||||||||||| ||||||||||   |||||||||||| ||||| |||| |||||||||| ||||||| ||| | ||||||||||||||||||     
T  16780615 aataataaagtcattgtg-aataaaagaattgaattaattttgg-ttcaatgttttattttcgtagttcatgatgtgtttgtcttgttttggctatatcc 16780712  T
Q  115 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaatt 206  Q
    |||  |||||||||||| |||||| ||||||| | || ||||||| ||||  || || ||| |||||| ||||||| |||||||| ||||||    
T  16780713 ggaattctggatgtccgattgaggcgatctttgagtccttggaaatcttagaaagttatctgcatttcgtctgtttaactcaagaacaaatt 16780804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 21352771 - 21352695
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgat 88  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  21352771 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgat 21352695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 21352606 - 21352670
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttc 76  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||    
T  21352606 aagaataataaagtcattatggaataaaagaacctaattaattttggattcaaagttttattttc 21352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 23660940 - 23661049
Alignment:
Q  31 tggaataaaa-gaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatctggagctctggatgtc 129  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||||||||| || ||||| || ||||||||| |  |||||| ||| | ||||||||    
T  23660940 tggaataaaatgaaccaaattaattttggtttcaa-gtattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23661038  T
Q  130 cgtttgaggtg 140  Q
    || ||||||||    
T  23661039 cgattgaggtg 23661049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 23797630 - 23797521
Alignment:
Q  31 tggaataaaa-gaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatctggagctctggatgtc 129  Q
    |||||||||| |||||||||||||||||| ||||| || | |||||||||||| || ||||| || ||||||||| |  |||||| ||| | ||||||||    
T  23797630 tggaataaaatgaaccaaattaattttggtttcaa-gtattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23797532  T
Q  130 cgtttgaggtg 140  Q
    || ||||||||    
T  23797531 cgattgaggtg 23797521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 258977 - 259125
Alignment:
Q  37 aaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatctggagctctggatgtccgtttga 136  Q
    ||||||||||||||| |||| ||||| |||| | ||||| ||| || |||  |  ||| |||||||| |||||||||| ||||||| |||||||  ||||    
T  258977 aaaagaaccaaattagtttt-ggttcgaagtgttatttttgtaagtgatgtcacctctgtcttgtttcggctatatcttgagctctagatgtccaattga 259075  T
Q  137 ggtgatctttaactcgttggaaagcttacgaaattctctacatttcatct 186  Q
     ||||| ||| | |||  ||||||||||   |||| |||||| |||||||    
T  259076 cgtgatatttgattcgacggaaagcttagagaattgtctacaattcatct 259125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 15018324 - 15018010
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15018324 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 15018225  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  15018224 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 15018125  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15018124 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 15018025  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  15018024 tagccttcacaaatc 15018010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 15019964 - 15019650
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15019964 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 15019865  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  15019864 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 15019765  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15019764 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 15019665  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  15019664 tagccttcacaaatc 15019650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 13518644 - 13518327
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  13518644 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 13518545  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13518544 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaa 13518445  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||| | | |||||||||||   ||||||||||||||||||||||||||||||    
T  13518444 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaattgtgtaatctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 13518345  T
Q  309 aattagccttcacaaatc 326  Q
    |||||||||| |||||||    
T  13518344 aattagcctttacaaatc 13518327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 9399303 - 9398987
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  9399303 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 9399204  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9399203 tatggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcgtctgtttgactcaagagcaaattcggaa 9399104  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||||| |||||  |  |||   || ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||| ||    
T  9399103 tatttaatggtgtagaatgatatataagcagaagacgtggttaaagtgtgttagctgaagaattaaaggcggtgtttgtggaattgtaacgtctagacat 9399004  T
Q  309 aattagccttcacaaat 325  Q
    ||| |||||||||||||    
T  9399003 aataagccttcacaaat 9398987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 39488834 - 39488517
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  39488834 aagaataataaattcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttattttggctata 39488735  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || |||    
T  39488734 tctggagctctagatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctccacaattcatctgtttgactcaagagcaaactcagaa 39488635  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||   |||||||||| |||||||||||||||||||    
T  39488634 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtgaaattgtaacgtctagaaat 39488535  T
Q  309 aattagccttcacaaatc 326  Q
    ||| || |||||||||||    
T  39488534 aataagtcttcacaaatc 39488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 13518105 - 13517922
Alignment:
Q  15 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatct 114  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||    
T  13518105 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 13518006  T
Q  115 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 198  Q
    ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13518005 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 13517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 11098499 - 11098718
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaa-ttaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||||| ||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||||||||||||| || | ||| |||||| ||    ||    
T  11098499 aagaataataaattcattatggaataaaagaatcaaatttattttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcat 11098598  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgg 209  Q
    |||| ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||    
T  11098599 atctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcataagcaaaatcgg 11098697  T
Q  210 aatatttaatggtgtaaaatg 230  Q
     |||| | |||||||||||||    
T  11098698 catatatcatggtgtaaaatg 11098718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 42873112 - 42872895
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | | | |||||| ||    |||    
T  42873112 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatatgtcttgtattcatcata 42873014  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| ||||||||||   ||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| |||| |  |||||| ||||     
T  42873013 tctagagctctggaatcccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggacttataagcaaaatcggc 42872915  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  42872914 atatatcatggtgtaaaatg 42872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 46690508 - 46690584
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgat 88  Q
    |||||||||||||||| |||||||||||||||| |||||||||||   || ||||||| ||||||||||||||||||    
T  46690508 aagaataataaagtcagtgtggaataaaagaactaaattaattttaaatttaaagttttattttcgtaggtcatgat 46690584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 21377201 - 21377418
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||| | |||||||||||||||||||| ||||| |||||| | ||| ||||||||||||||| || | ||| |||| | ||    |||    
T  21377201 aagaataataaagtcaatatggaataaaagaaccaaatt-atttttggttcagatttttattttcgtaggtcattatgtatctgtcttatattcatcata 21377299  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||| ||||| || |  || | |||||||||||||| |   | |||||||  ||| ||||  |||||||||||| |||| ||||||  |||||| |||| |    
T  21377300 tctagagctttgcaactctgattgaggtgatctttgaagtgatggaaagggtacaaaatcatctacatttcatatgttggactcagaagcaaaatcggca 21377399  T
Q  212 tatttaatggtgtaaaatg 230  Q
    ||| | |||||||||||||    
T  21377400 tatatcatggtgtaaaatg 21377418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 9166926 - 9166970
Alignment:
Q  282 gtttgtggaattgtaacgtctagaaataattagccttcacaaatc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9166926 gtttgtggaattgtaacgtctagaaataattagccttcacaaatc 9166970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 18281429 - 18281212
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| | ||||||||||| |||||| ||||| ||||||||   | ||||||||||||||| || | ||| |||||  ||    |||    
T  18281429 aagaataataaagtcattatcgaataaaagaatcaaatt-atttttggttcaaatagttattttcgtaggtcattatgtatctgtcttgcattcatcata 18281331  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| |||||||  |  |||| || ||||||||||| |  ||||| ||||  ||| |||||| |||||||||||| |||| ||||||  || ||| ||||     
T  18281330 tctagagctctacaactccgatttaggtgatctttgaagcgttgaaaagggtac-aaattcatctacatttcatatgttggactcagaagaaaaatcggc 18281232  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  18281231 atatatcatggtgtaaaatg 18281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 30875080 - 30874982
Alignment:
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgg 209  Q
    |||| |||||||||||||| |||| | ||||||||||| ||||||||||| |||  |||   |||||||||||||  ||  |||||||| |||||||||    
T  30875080 atcttgagctctggatgtctgtttaacgtgatctttaattcgttggaaagtttaaaaaaaattctacatttcatcatttaaactcaagatcaaattcgg 30874982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 22473681 - 22473750
Alignment:
Q  14 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcat 85  Q
    |||||||||||||||| ||||||||||||||||| ||  |||| |||||||| | | |||||||| ||||||    
T  22473681 gaataataaagtcattatggaataaaagaaccaattt--tttttggttcaaattgttattttcgttggtcat 22473750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 24664095 - 24663929
Alignment:
Q  22 aagtcattgtggaataaaagaaccaaattaattttgggttcaaagttta-attttcgta--ggtcatgatatgtctatcttgttttggctatatctggag 118  Q
    |||| ||| ||| |||| |||||||||||| |||||| ||||||||||  || ||||||  | |||| |||| ||| |||||||||| | |||||| |||    
T  24664095 aagttattatggcataagagaaccaaattatttttgg-ttcaaagtttttatattcgtatagatcattatatatctgtcttgttttgtccatatctagag 24663997  T
Q  119 ctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatct 186  Q
     | | |||||||| |||| |  |||||||| | |||||||||||||  || || ||| ||||||||||    
T  24663996 atgtcgatgtccgattgatgcaatctttaatttgttggaaagcttagaaatttatctgcatttcatct 24663929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 36233308 - 36233622
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  36233308 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 36233407  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  36233408 tctggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 36233507  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36233508 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtgtttgtggaattgtaacgtctagaaataat 36233607  T
Q  312 tagccttcacaaatc 326  Q
    |||||||||||||||    
T  36233608 tagccttcacaaatc 36233622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 24157737 - 24157420
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  24157737 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttagctata 24157638  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  24157637 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaactcaagagaaaattcggaa 24157538  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||   ||||||||||||||||||||||||||||||    
T  24157537 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagcggaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 24157438  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  24157437 aataagccttcacaaatc 24157420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 20189478 - 20189164
Alignment:
Q  15 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  20189478 aataataaagtcattgtggaataaaagaaccaaattaattttggtttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 20189379  T
Q  115 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaatat 214  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  20189378 ggagttctggatgtccgtttgaggtgatcttcaacttgttggaaagtttacaaaattctctacatttcatctgtttgactcaagagcaaagtcggaatat 20189279  T
Q  215 ttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaataat 311  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||| |||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  20189278 ttaatggtgtaaagtgagttgtaagttgaaaacgtagttaaagtgtgtaagcttaagaattaaaggtggtgtttgtggaattgtaacgtctagaaataat 20189179  T
Q  312 tagccttcacaaatc 326  Q
     ||||||||||||||    
T  20189178 aagccttcacaaatc 20189164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 20191114 - 20190797
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  20191114 aagaataataaagtcattatagaataaaagaacctaattaattttgggttcaaagttttattttcgtatgtcatgatatgtctgtcttgttttgactata 20191015  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  20191014 tctggagctttggatgtccgtttgaggtgatctttaactctttggaaagcttactaaattatctacatttcatctgtttgactcaagagcaaattcggaa 20190915  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||| | |||||||||||| ||||| |||||||| | ||||||||| ||| |||||||||||   |||||||||||||||||||||||| |||||    
T  20190914 tatttaatgttttaaaatgagttgtaagttgaaaacgtgatgaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtcttgaaat 20190815  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  20190814 aataagccttcacaaatc 20190797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 48462802 - 48463074
Alignment:
Q  8 tgagaagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggc 107  Q
    ||||||||||||||||||||||| | || ||||||| |||||||||||| | |||||||||| ||||| |||||||||||||||| | ||||||||||||    
T  48462802 tgagaagaataataaagtcattgcgaaa-aaaagaatcaaattaattttagattcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggc 48462900  T
Q  108 tatatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattc 207  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  48462901 tatatttggagctctggatatccgtttgatgtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagagcaaattc 48463000  T
Q  208 ggaatatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggt 281  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | | ||||||||||||||    
T  48463001 ggaatatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaaactgaagaattaaaggt 48463074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 36234040 - 36233845
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  36234040 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 36233941  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattc 207  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36233940 tctggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 36233845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 48464040 - 48463831
Alignment:
Q  10 agaagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggcta 109  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||    
T  48464040 agaataataataaagttattgtggaataaaagaaccaaaataattttgggttcaaattttattttt-gtaggtcatgatatgtctgtcttgttttggcta 48463942  T
Q  110 tatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  48463941 tatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctttacatttcatctgtttgactca--agcaaattcgg 48463844  T
Q  210 aatatttaatggt 222  Q
    ||| |||||||||    
T  48463843 aatttttaatggt 48463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 20759106 - 20759397
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggc--ta 109  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||  ||    
T  20759106 aagaataataaagtcattgtgaaa---aagaaccaaattaattttgg-ttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 20759201  T
Q  110 tatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgg 209  Q
    ||| ||||| ||||||||||||  |||||| |||||| ||||  ||||||| |||| |||||||||||||        |||| || ||||||||||||||    
T  20759202 tatatggagttctggatgtccgagtgaggtaatcttttactctatggaaagtttacaaaattctctacat--------tttgtctgaagagcaaattcgg 20759293  T
Q  210 aatatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaa 306  Q
    ||||||||||||||||||||||  || ||||| || |  || ||||||||| | ||| ||| |||||||   |||||||||||||||||||| |||| ||    
T  20759294 aatatttaatggtgtaaaatgaactgtaagttgaagatatgattaaagtgtataagctgaaaaattaaagatggtgtttgtggaattgtaacatctataa 20759393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 40553903 - 40554120
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | ||| |||||| ||    |||    
T  40553903 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 40554001  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| || | ||||||  |||||| ||||     
T  40554002 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgctggactcagaagcaaaatcggc 40554100  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  40554101 atatatcatggtgtaaaatg 40554120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 31390149 - 31390221
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcat 85  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | |||||||||||||||    
T  31390149 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcat 31390221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 40554738 - 40554666
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcat 85  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | |||||||||||||||    
T  40554738 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcat 40554666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 9647619 - 9647302
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  9647619 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 9647520  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9647519 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaa 9647420  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaa---aggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||| | | ||||||||||   |||||||||||||||||||||||||||||||    
T  9647419 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaattgtgtaacctgaagaattaaaggaggtgtttgtggaattgtaacgtctagaaat 9647320  T
Q  309 aattagccttcacaaatc 326  Q
    ||| |||||| |||||||    
T  9647319 aatcagcctttacaaatc 9647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 7842676 - 7842993
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||| ||||    
T  7842676 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcaagatatgtctgttttgttttggttata 7842775  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||    
T  7842776 tctagagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctatacaattcatccgtttgactcaagtgcaaattcggaa 7842875  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaa---aggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||  |||||||||||||||||||| ||| | ||||||||   |||||||||||||||||||||||||||||||    
T  7842876 tatttaatggtttaaaatgagttgtaagtagaaaacgtggttaaagtgtgtaagctggagaattaaaggaggtgtttgtggaattgtaacgtctagaaat 7842975  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  7842976 aataagccttcacaaatc 7842993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 9596117 - 9595803
Alignment:
Q  15 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatct 114  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||    
T  9596117 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9596018  T
Q  115 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaatat 214  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9596017 ggagctcccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9595918  T
Q  215 ttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaa---aggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||  |||||||||||| ||||| |||||||||||||||||||| ||| | ||||||||   ||||||||||||||||||||||||||||||||||    
T  9595917 ttaatggcttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctggagaattaaaggaggtgtttgtggaattgtaacgtctagaaataat 9595818  T
Q  312 tagccttcacaaatc 326  Q
     ||||||||||||||    
T  9595817 aagccttcacaaatc 9595803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 9647080 - 9646766
Alignment:
Q  15 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctatatct 114  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||    
T  9647080 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9646981  T
Q  115 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaatat 214  Q
    ||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9646980 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9646881  T
Q  215 ttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaa---aggtgtttgtggaattgtaacgtctagaaataat 311  Q
    |||||||  |||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||   ||||||||||||||||||||||||||||||||||    
T  9646880 ttaatggcttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggaggtgtttgtggaattgtaacgtctagaaataat 9646781  T
Q  312 tagccttcacaaatc 326  Q
     ||||||||||||||    
T  9646780 aagccttcacaaatc 9646766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 40998903 - 40998586
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||    
T  40998903 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttattttggctata 40998804  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||    
T  40998803 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcttaa 40998704  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| |||||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||| ||||||||||||||||||  ||    
T  40998703 tatttaatggtgcaaaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttatggaattgtaacgtctagccat 40998604  T
Q  309 aattagccttcacaaatc 326  Q
    ||| | ||||||||||||    
T  40998603 aataatccttcacaaatc 40998586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 23446662 - 23446932
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  23446662 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 23446761  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  23446762 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttaccaaattctctacatttcatctgtttgagtcaagagcaaattcggaa 23446861  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggtg 282  Q
    |||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||||||    
T  23446862 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtg 23446932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 41000763 - 41000445
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaatttt-cgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||  |||||||||||||||    
T  41000763 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttatttttcgtaggtcatgatatgtcggtcttgttttggctat 41000664  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |    
T  41000663 atctggagctctggatgtccgtttgaggtgatctctaactcgttggaaagcttgcgaaattctctacatttcatctgtttgattcaagagcaaattctta 41000564  T
Q  211 atatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaa 307  Q
    ||||||||||||| ||||||||||| ||||  || ||||||||||||| ||||||| |||||||||||   ||||||| ||||||||||||||||||  |    
T  41000563 atatttaatggtgcaaaatgagttgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttatggaattgtaacgtctagcca 41000464  T
Q  308 taattagccttcacaaatc 326  Q
    |||| | ||||||||||||    
T  41000463 taataatccttcacaaatc 41000445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 24790122 - 24790165
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattt 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790122 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 24790199 - 24790156
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattt 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790199 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 22300580 - 22300263
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  22300580 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgtttttgctata 22300481  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22300480 tccggagctctggatgtccgtttgaggtgatctttaacttgttggaaagcttacggaattctctacatttcatctgtttgactcaagagcaaattcggaa 22300381  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||  ||| |||||||||||   ||||||||||||||||||||||||||||||    
T  22300380 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgcaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 22300281  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  22300280 aataagccttcacaaatc 22300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 18535986 - 18535669
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  18535986 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 18535887  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  18535886 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcggaa 18535787  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||| ||||||||||||  ||    
T  18535786 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 18535687  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||| ||||||||||    
T  18535686 aataagcattcacaaatc 18535669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 24806969 - 24806673
Alignment:
Q  12 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  24806969 aagaataataaaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 24806870  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  24806869 atctggagctccggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 24806770  T
Q  211 atatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctag 304  Q
    ||||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||||||||    
T  24806769 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctag 24806673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 24808825 - 24808529
Alignment:
Q  12 aagaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  24808825 aagaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 24808726  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  24808725 atctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 24808626  T
Q  211 atatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctag 304  Q
    ||||||||||||  | |||||| || || |  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||| ||||    
T  24808625 atatttaatggttcagaatgagctgtaattagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacggctag 24808529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 31974177 - 31974034
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  31974177 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtttgtcttgttttggctata 31974078  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttg 155  Q
    || |||| ||||||||||||||||||||||||||||||||||||    
T  31974077 tcgggagttctggatgtccgtttgaggtgatctttaactcgttg 31974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 22299690 - 22299814
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  22299690 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgcctata 22299789  T
Q  112 tctggagctctggatgtccgtttga 136  Q
    ||||||||| |||||||||| ||||    
T  22299790 tctggagctttggatgtccgcttga 22299814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 44793492 - 44793275
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | ||| |||||| ||    |||    
T  44793492 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 44793394  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||     
T  44793393 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcagaagcaaaatcggc 44793295  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  44793294 atatatcatggtgtaaaatg 44793275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 24806089 - 24806147
Alignment:
Q  12 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaagttt 69  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24806089 aagaataataaaagtcattgtggaataaaagaaccaatttaattttgggttcaatgttt 24806147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 44792615 - 44792687
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcat 85  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||| |||||||||    
T  44792615 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcat 44792687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 31973965 - 31973994
Alignment:
Q  107 ctatatctggagctctggatgtccgtttga 136  Q
    ||||||||||||||||||||||||||||||    
T  31973965 ctatatctggagctctggatgtccgtttga 31973994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 8366107 - 8366424
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  8366107 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 8366206  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  8366207 tttggagctctggatgtccgtttgaggtgatctttaactcgtttgaaagcttacggaattctctacattttatctatttgactcaagagcaaattcggaa 8366306  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||   ||||||||||||||||||||||||||||||    
T  8366307 tatttaacggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 8366406  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  8366407 aataagccttcacaaatc 8366424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 17278358 - 17278042
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  17278358 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttta-ttttcgtaagtcatgatatgtctgtcttgttttggctata 17278260  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  17278259 tctggagctctagatgtccgtttgaggtgatctttaactcattggaaagcttacgaaattttctacatttcgtctgtttgactcaaaagcaaattcggaa 17278160  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||| ||||||| |||||| |  ||||  || ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||| ||    
T  17278159 tatttagtggtgtagaatgagctataagtagaagacgtggttaaagtgtgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagacat 17278060  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  17278059 aataagccttcacaaatc 17278042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 17277409 - 17277598
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||    
T  17277409 aagaataataaagtcattgtggaataaaagaatcaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggctata 17277508  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagc 201  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  17277509 tctggagctctggatgtccgtttgaggtgatctttaactcattggaaagcttacggaattctctacatttcgtctgtttgactcaggagc 17277598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 6778338 - 6778187
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||||| |||| |  | |||||||||||||| ||||||||||||||||    
T  6778338 aagaataataaagttattgtggaataaaagaaccgaattaatttt-ggttctaagttttatttacacatgtcatgatatgtctgtcttgttttggctata 6778240  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagctta 164  Q
    | |||||||||| || | ||  ||||||| ||||| | || || |||||||||    
T  6778239 tttggagctctgaatattcgagtgaggtgttctttgagtctttagaaagctta 6778187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 17857163 - 17857380
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | ||| |||||| ||    |||    
T  17857163 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 17857261  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||     
T  17857262 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcagaagcaaaatcggc 17857360  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  17857361 atatatcatggtgtaaaatg 17857380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 17277677 - 17277720
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  17277677 aagaataataaagtcattatggaataaaagaaccaaattaattt 17277720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 23016778 - 23016561
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||| ||||||| || |||||||||| || ||||||| |||||| |||||| | | ||||||||||||||| || | ||| |||||| ||    |||    
T  23016778 aagaatattaaagtcgttatggaataaaaaaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 23016680  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| ||| |||| |  |||  |||||||||| ||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||     
T  23016679 tctagagttctgcaactccaattgaggtgatatttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcataagcaaaatcggc 23016581  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  23016580 atatatcatggtgtaaaatg 23016561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 23016444 - 23016372
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcat 85  Q
    ||||||| |||||||||| ||||||||||||| |||||| ||||| |||||||| | | |||||||||||||||    
T  23016444 aagaatattaaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcat 23016372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 25531636 - 25531953
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  25531636 aagaataataaattcattgtagaaaaaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgactata 25531735  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||    
T  25531736 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttatggaattctctacatttcatctgtttgacttaagagcaaattcagaa 25531835  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||   ||||||||||||||||||||||||||||||    
T  25531836 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 25531935  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  25531936 aataagccttcacaaatc 25531953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 5554475 - 5554158
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  5554475 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctata 5554376  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5554375 tctggagctctggatgtccgtttgaggtgatctttaactcgttggatagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaa 5554276  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||||||||  ||    
T  5554275 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagccat 5554176  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  5554175 aataagccttcacaaatc 5554158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 16346634 - 16346951
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  16346634 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 16346733  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  16346734 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgagtcaagagcaaattcagaa 16346833  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||| ||||||||||||  ||    
T  16346834 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 16346933  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||| ||||||||||    
T  16346934 aataagcattcacaaatc 16346951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 23460202 - 23460519
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  23460202 aagaataataaagtcattgtagaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcattatatgtctgtcttgttttggctata 23460301  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23460302 tctggagctctggatatccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaa 23460401  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| | |||||| || | ||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||||||||  ||    
T  23460402 tatttaatggtgcagaatgagctgtaggtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagccat 23460501  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  23460502 aataagccttcacaaatc 23460519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 47418660 - 47418343
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  47418660 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 47418561  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||    
T  47418560 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcagaa 47418461  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||| ||||||||||||  ||    
T  47418460 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 47418361  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||| ||||||||||    
T  47418360 aataagcattcacaaatc 47418343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 5553198 - 5553467
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  5553198 aagaataataaagtcattgtgaaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctatcttgttttggctata 5553297  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||    
T  5553298 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaattcaagagcaaattcgaaa 5553397  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaaggt 281  Q
    |||||||||||| | |||||| || ||||  || |||||||| |||| ||||||  ||||||||||||||    
T  5553398 tatttaatggtgcagaatgagctgtaagtagaagacgtggttgaagtatgttagttgaagaattaaaggt 5553467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 16022836 - 16022616
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  16022836 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 16022737  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  16022736 tctgaagctctggatgtccgtttgaggtggtctttaactcgttggaaagcttacgaagttctctacatttcgtctgtttgactcaagatcaaattcggaa 16022637  T
Q  212 tatttaatggtgtaaaatgag 232  Q
    |||||| ||||||| ||||||    
T  16022636 tatttagtggtgtagaatgag 16022616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 47566476 - 47566792
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatat--gtctatcttgttttggcta 109  Q
    ||||||||||||||||||||||||||||||||   | |||||||||  || ||| |||| ||||||||| |||||||||  || | |||||| |||||||    
T  47566476 aagaataataaagtcattgtggaataaaagaattgatttaattttgatttaaaatttta-ttttcgtagatcatgatatatgtttgtcttgtcttggcta 47566574  T
Q  110 tatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgg 209  Q
    ||||||||||| ||||||| || |||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||  ||||||||||      
T  47566575 tatctggagctatggatgttcgattgaggtgatctttaattcgttggaaagcttacaaaattctttacatttcgtctgtttgactc--gagcaaattcaa 47566672  T
Q  210 aatatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaa 306  Q
    |||||||||||||||| |||||| || ||||| || ||||| ||||||||||  ||  |||||||||||   |||||||||||||||||||  |||||||    
T  47566673 aatatttaatggtgtagaatgagctgtaagttgaagacgtgattaaagtgtgcaagttgaagaattaaaagtggtgtttgtggaattgtaatttctagaa 47566772  T
Q  307 ataattagccttcacaaatc 326  Q
    ||||| ||| ||||||||||    
T  47566773 ataataagctttcacaaatc 47566792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 32570538 - 32570674
Alignment:
Q  71 attttcgtaggtcatgatatgtctatcttgttttggctatatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaat 170  Q
    |||||||||| |||| |||||||||| |||||||  |||||||||||| |||||||||    |||||||||||||||| |||||||||||||||| ||||    
T  32570538 attttcgtagatcattatatgtctattttgtttttactatatctggagttctggatgttatattgaggtgatctttaattcgttggaaagcttacaaaat 32570637  T
Q  171 tctctacatttcatctgtttgactcaagagcaaattc 207  Q
    | |||||||||  | |||||||||| |||||||||||    
T  32570638 tatctacattttgtatgtttgactcgagagcaaattc 32570674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 2683485 - 2683660
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| |||||||||| || ||||||||||||  ||||||||| | ||||| |||| |||| | |||||| |||| ||||  |||||    
T  2683485 aagaataataaaatcattttggaataaaaaaatcaaattaatttt-tgttcaaagtgttatttttgtagatcataacatgtctgtcttattttatctata 2683583  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgt 188  Q
    ||| |  || || ||||||| || |  |||||||||| |||||| || | |||| ||||| |||| ||||| |||||    
T  2683584 tctaggactttgaatgtccgattcaaatgatctttaattcgttgaaatgattacaaaattatctatatttcgtctgt 2683660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 25532867 - 25532821
Alignment:
Q  60 ttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttgg 106  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  25532867 ttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgg 25532821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 54856 - 55174
Alignment:
Q  12 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||    
T  54856 aagaataataaaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgctatgtctgtcttgttttcgctat 54955  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  54956 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcgga 55055  T
Q  211 atatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaa 307  Q
    ||||||||||||| | |||||| || ||||  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||||||||  |    
T  55056 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagcca 55155  T
Q  308 taattagccttcacaaatc 326  Q
    |||| ||||||||||||||    
T  55156 taataagccttcacaaatc 55174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 86583 - 86896
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||| |||    |||||||||||||    
T  86583 aagaataataaagtcattgtggaataaaggaaccaaattaattttgggttcaatgttttatttttgtaggtcatgatatctct----tgttttggctata 86678  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    | ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  86679 tatggagctcctgatgtccgtttgaggtgatctttaactcgtttgaaagcttacgaaattctctaaatttcatctgtttgactcaagagcaaattcggaa 86778  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||| || ||| |||||||||||   ||||||||||||||||||||||||| ||||    
T  86779 tatttaatggtgtaaaatgagttgtaagctgaaaacgtggttaaagtgagtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctataaat 86878  T
Q  309 aattagccttcacaaatc 326  Q
    ||| ||||||||||||||    
T  86879 aataagccttcacaaatc 86896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 746 - 643
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  746 aagaataataaagtcattgagaaataaaagaatcaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctatcttgttttggctata 647  T
Q  112 tctg 115  Q
    ||||    
T  646 tctg 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 241046 - 241363
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  241046 aagaataataaagtcattgcagaataaaagaaccaaattaattttgggtttaaagttttattttcgtaggtcataatatgtctgtcttgttttggctata 241145  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||    
T  241146 tctgaagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaagttctctacatttcgtctttttgactcaggagcaaattcggaa 241245  T
Q  212 tatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 308  Q
    |||||| ||||||| |||||| |  ||||  || ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||| ||    
T  241246 tatttagtggtgtagaatgagctataagtagaagacgtggttaaagtgtgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagacat 241345  T
Q  309 aattagccttcacaaatc 326  Q
    ||| |||||||| |||||    
T  241346 aataagccttcaaaaatc 241363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 769 - 473
Alignment:
Q  12 aagaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctat 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  769 aagaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 670  T
Q  111 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  669 atctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 570  T
Q  211 atatttaatggtgtaaaatgagttgcaagttaaaaacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctag 304  Q
    ||||||||||||  | |||||| || || |  || ||||||||||||| ||||||| |||||||||||   ||||||||||||||||||||| ||||    
T  569 atatttaatggttcagaatgagctgtaattagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacggctag 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 31591 - 31762
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  31591 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 31690  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttca 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31691 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttca 31762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 145 - 326
Target Start/End: Complemental strand, 1954 - 1770
Alignment:
Q  145 ttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaatatttaatggtgtaaaatgagttgcaagttaaa 244  Q
    |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || || ||    
T  1954 ttaactcgttggaaagcttatggaattctctacatttcatctgtctgactcaagagcaaattcggaatatttaatggtttaaaatgagttgtaatttgaa 1855  T
Q  245 aacgtggttaaagtgtgttagccgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaataattagccttcacaaatc 326  Q
    |||||||||||||||||| ||| |||||||||||   ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  1854 aacgtggttaaagtgtgtaagcggaagaattaaaggtggtgtttgtggaattgtaacgtctagaaataataagctttcacaaatc 1770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 2051 - 1973
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatat 90  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2051 aagaataataatgtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatat 1973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 22399 - 22510
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  22399 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 22498  T
Q  112 tctggagctctg 123  Q
    ||||||||||||    
T  22499 tctggagctctg 22510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 17657 - 17776
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  17657 aagaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 17756  T
Q  112 tctggagctctggatgtccg 131  Q
    ||||||||||||||||||||    
T  17757 tctggagctctggatgtccg 17776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 27188 - 27307
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  27188 aagaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 27287  T
Q  112 tctggagctctggatgtccg 131  Q
    ||||||||||||||||||||    
T  27288 tctggagctctggatgtccg 27307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 13582 - 13365
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| || | ||| | |||| ||    |||    
T  13582 aagaataataaagtcattatggaataaaagaaccaaatt-attttgggttcaaatttttattttcgtaggtcattatgtatctgttttgtattcatcata 13484  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| |||||||  |  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| |  |||  |||||| ||||     
T  13483 tctagagctctacaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttgggttcagaagcaaaatcggc 13385  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  13384 atatatcatggtgtaaaatg 13365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 5220 - 5437
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | | | |||||| ||    |||    
T  5220 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatgtgtcttgtattcatcata 5318  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| || |||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||     
T  5319 tctagaactctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcagaagcaaaatcggc 5417  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  5418 atatatcatggtgtaaaatg 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 11481 - 11265
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    ||||||| |||||||||| ||||||||||||| ||||||| |||||| |||||| | | ||||||||||||||| || | ||| |||||| ||    |||    
T  11481 aagaatattaaagtcatt-tggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 11384  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    ||| |||||||| |  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||  |||||| ||||     
T  11383 tctagagctctgcaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactcagaagcaaaatcggc 11285  T
Q  211 atatttaatggtgtaaaatg 230  Q
    |||| | |||||||||||||    
T  11284 atatatcatggtgtaaaatg 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 4225 - 4442
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| | | ||||||||||||||| || | ||| | |||| ||    |||    
T  4225 aagaataataaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtattgtattcatcata 4323  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactcaagagcaaattcgga 210  Q
    | | |||||||  |  |||| ||||||||||||||||  |||| |||||  ||| |||||| |||||||||||| |||||||||||  |||||| ||||     
T  4324 tttagagctctacaactccgattgaggtgatctttaaagcgttcgaaagggtac-aaattcatctacatttcatatgtttgactcagaagcaaaatcggc 4422  T
Q  211 atatttaatggtgtaaaatg 230  Q
    | || | |||||||||||||    
T  4423 agatatcatggtgtaaaatg 4442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 375392 - 375180
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttaattttcgtaggtcatgatatgtctatcttgttttggctata 111  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | | ||||| ||||||||| || | ||| |||||| ||    |||    
T  375392 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcattatgtatctgtcttgtattcctcata 375294  T
Q  112 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagagcaaattcggaa 211  Q
    ||| ||||||||||  || | |||||||||||||| |  ||||||||||  ||| ||||    |||||||||| |||| ||||||  |||||| |||| |    
T  375293 tctagagctctggaactctgattgaggtgatctttgaagcgttggaaagggtac-aaat----tacatttcatatgttggactcagaagcaaaatcggca 375199  T
Q  212 tatttaatggtgtaaaatg 230  Q
    ||| | |||||||||||||    
T  375198 tatatcatggtgtaaaatg 375180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 12037103 - 12037064
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaatta 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12037103 aagaataataaagtcattgtggaataaaagaaccaaatta 12037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 12037016 - 12037053
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaat 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12037016 aagaataataaagtcattgtggaataaaagaaccaaat 12037053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8946 - 8902
Alignment:
Q  12 aagaataataaagtcattgtggaataaaagaaccaaattaatttt 56  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  8946 aagaataataaagtcattgtggaatataagaaccaagttaatttt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University