View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16348_high_1 (Length: 317)
Name: NF16348_high_1
Description: NF16348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16348_high_1 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 7664 - 7969
Alignment:
| Q |
7 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664 |
ctgagatgaaaaaagtaatggaggaagagatcgacaccgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
7763 |
T |
|
| Q |
107 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
206 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7764 |
tttggcggacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
7863 |
T |
|
| Q |
207 |
ttagtaaaagaaagtctagatgatgaggtatctttgttgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7864 |
ttagtaaaagaatgtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
7963 |
T |
|
| Q |
307 |
tgatgt |
312 |
Q |
| |
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|||||| |
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|
| T |
7964 |
tgatgt |
7969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 22261351 - 22261656
Alignment:
| Q |
7 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22261351 |
ctgagatgaaaaaggtaatggaggaagagatcgacactgtgaagaaggaatttgggttggagattttaaaaatgagtaaaatcttagaagctcaagtgca |
22261450 |
T |
|
| Q |
107 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
22261451 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgttt |
22261550 |
T |
|
| Q |
207 |
ttagtaaaagaaagtctagatgatgaggtatctttgttgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22261551 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
22261650 |
T |
|
| Q |
307 |
tgatgt |
312 |
Q |
| |
|
|||||| |
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|
| T |
22261651 |
tgatgt |
22261656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 15779400 - 15779095
Alignment:
| Q |
7 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||| |
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| T |
15779400 |
ctgagatgaaaaaactaatggaggaagagatcgagactgtgaagaaggaatctgagatggagatatcaaacatgaataaaatcttagaagctcaagtgca |
15779301 |
T |
|
| Q |
107 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15779300 |
tttggctgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgtggaaattgctagttttaagaagattgccatggaggagttgttt |
15779201 |
T |
|
| Q |
207 |
ttagtaaaagaaagtctagatgatgaggtatctttgttgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15779200 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagagttaggatggtcaaatagttcattgtggaagctgaaattggttgtgcttatga |
15779101 |
T |
|
| Q |
307 |
tgatgt |
312 |
Q |
| |
|
|||||| |
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|
| T |
15779100 |
tgatgt |
15779095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 24034423 - 24034122
Alignment:
| Q |
7 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24034423 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttggggtggagattttaaaaatgagtaaaatcttagaagctcaagtgca |
24034324 |
T |
|
| Q |
107 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
24034323 |
tttggccgacgaggaaaacaaataaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgtcatggaggagttgttt |
24034224 |
T |
|
| Q |
207 |
ttagtaaaagaaagtctagatgatgaggtatctttgttgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24034223 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
24034124 |
T |
|
| Q |
307 |
tg |
308 |
Q |
| |
|
|| |
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|
| T |
24034123 |
tg |
24034122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 7659666 - 7659565
Alignment:
| Q |
45 |
gtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcatttggccgacgaggaaaacaaagaaaatttgcttgaag |
144 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||| || || ||||||||||||||||| |||| | | ||||||||||||||| || || |||||| |
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|
| T |
7659666 |
gtgaaaaaggaatctgagatggagatatcaaacttgaaaaacatgttagaagctcaagtgcagttggtccaggaggaaaacaaagaacatatggttgaag |
7659567 |
T |
|
| Q |
145 |
tg |
146 |
Q |
| |
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|| |
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|
| T |
7659566 |
tg |
7659565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 17341112 - 17340842
Alignment:
| Q |
7 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
17341112 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttgggatggagattttaaaaatgagtaaaatcttataagctcaagtgca |
17341013 |
T |
|
| Q |
107 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
17341012 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgttt |
17340913 |
T |
|
| Q |
207 |
ttagtaaaagaaagtctagatgatgaggtatctttgttgaaggaagaggtaggatggtcaaatagttcatt |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
17340912 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtccaatagttcatt |
17340842 |
T |
|
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