View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16348_low_2 (Length: 309)
Name: NF16348_low_2
Description: NF16348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16348_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 22061533 - 22061835
Alignment:
| Q |
5 |
ggacatcatcatcatccccagaaatacaatcttcaccagcgatctccatctctgatcagtttatcagcaaaacctccaattcatgctcctgttactcctc |
104 |
Q |
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| T |
22061533 |
ggacatcatcatcatccccggaaatacaatcttcaccagcgatctccatctctgatcagtttatcagcaaaacctccaattcatgctcctgttactcctc |
22061632 |
T |
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| Q |
105 |
cactccgataatccttccttcttcgcttcaacacctaaatccggccaattgtttctgacgataataccaaaggttcactcgccggcgatggatttcggtg |
204 |
Q |
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| T |
22061633 |
cactccgatattccttccttcttcgctccaacacctaaatccggccaattgtttctgacgataataccaaaggttcactcgccggcgatggatttcggtg |
22061732 |
T |
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| Q |
205 |
ttggattgtcggcgaacccta----ttaattatatccaaaatggtgctaacatctttgacaaaatcatcatcccttagatgtaactgattactattctta |
300 |
Q |
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| T |
22061733 |
ttggattgtcggcgaaccctattcgttaattatatccaaaatggtgttaacatctttgacaaaatgatcatcccttagatgtaactgattactattctta |
22061832 |
T |
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| Q |
301 |
tca |
303 |
Q |
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| T |
22061833 |
tca |
22061835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 32904337 - 32904262
Alignment:
| Q |
228 |
aattatatccaaaatggtgctaacatctttgacaaaatcatcatcccttagatgtaactgattactattcttatca |
303 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
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| T |
32904337 |
aattatatccaaaatggtcttaacatctttgacaaaaccatcatcccttaaatgtaactgactactattcttatca |
32904262 |
T |
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