View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16348_low_7 (Length: 222)

Name: NF16348_low_7
Description: NF16348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16348_low_7
NF16348_low_7
[»] chr8 (6 HSPs)
chr8 (1-125)||(15333384-15333508)
chr8 (1-125)||(15513753-15513877)
chr8 (1-125)||(15422480-15422604)
chr8 (1-125)||(14980419-14980543)
chr8 (25-125)||(18802347-18802447)
chr8 (133-201)||(1734766-1734834)
[»] chr6 (2 HSPs)
chr6 (1-125)||(14962952-14963076)
chr6 (65-125)||(17006621-17006681)
[»] chr4 (3 HSPs)
chr4 (3-125)||(35184493-35184615)
chr4 (15-125)||(4103645-4103755)
chr4 (28-72)||(2468924-2468968)
[»] chr5 (2 HSPs)
chr5 (1-125)||(21301636-21301760)
chr5 (28-88)||(5404737-5404797)
[»] chr7 (2 HSPs)
chr7 (1-125)||(48630658-48630780)
chr7 (133-195)||(14324321-14324383)
[»] chr3 (3 HSPs)
chr3 (131-201)||(10791960-10792030)
chr3 (133-201)||(14683758-14683826)
chr3 (133-179)||(7342075-7342121)
[»] chr1 (2 HSPs)
chr1 (133-201)||(41369265-41369333)
chr1 (133-201)||(22085857-22085925)
[»] scaffold0101 (2 HSPs)
scaffold0101 (133-201)||(46878-46946)
scaffold0101 (133-201)||(51516-51584)
[»] chr2 (1 HSPs)
chr2 (133-201)||(24950588-24950656)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-37)||(3311-3347)
[»] scaffold0193 (1 HSPs)
scaffold0193 (138-202)||(27373-27437)
[»] scaffold0323 (1 HSPs)
scaffold0323 (133-176)||(4011-4054)
[»] scaffold0051 (1 HSPs)
scaffold0051 (133-179)||(79275-79321)
[»] scaffold1701 (1 HSPs)
scaffold1701 (157-201)||(1413-1457)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 15333384 - 15333508
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  15333384 tattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttat 15333483  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    |||||||||||||||||||||||||    
T  15333484 ttaattgtttcatgaactgttgtat 15333508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 15513753 - 15513877
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  15513753 tattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttat 15513852  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    |||||||||||||||||||||||||    
T  15513853 ttaattgtttcatgaactgttgtat 15513877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 15422480 - 15422604
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||||    
T  15422480 tattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttatgttttat 15422579  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    |||||||||||||||||||||||||    
T  15422580 ttaattgtttcatgaactgttgtat 15422604  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 14980543 - 14980419
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  14980543 tattgcctaaagaggtcataacattgaaagcttatgtttcgtttaatttatgaaatgcttcacattatcactgtcaaagtttgttgatgttctgttttat 14980444  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
     || |||||||||||||||||||||    
T  14980443 atagttgtttcatgaactgttgtat 14980419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 18802347 - 18802447
Alignment:
Q  25 tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttatttaattgtttcatgaactgttgta 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  18802347 tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatgttctgttttatttacttgtttcatgaactgttgta 18802446  T
Q  125 t 125  Q
    |    
T  18802447 t 18802447  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1734834 - 1734766
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  1734834 tccacgcgatgattgacatctgtccaatatcaaaagctatatatgactctgagtcatacttttgctctt 1734766  T

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Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 14962952 - 14963076
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||    
T  14962952 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatatttgacattatcactgtcaaaatttgttgatggtctgttttat 14963051  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    ||| |||||||||||||||||||||    
T  14963052 ttacttgtttcatgaactgttgtat 14963076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 17006621 - 17006681
Alignment:
Q  65 ttatcactgtcaaagtttgttgataatctgttttatttaattgtttcatgaactgttgtat 125  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  17006621 ttatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatgaactgttgtat 17006681  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 35184493 - 35184615
Alignment:
Q  3 ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttattt 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||  |||||| |||||    
T  35184493 ttgcctaaagaggtcataacattgaaagtttatgttttgtttaatttatgaaatgcttgacattatcacggtcaaagtttgttgatgttctgttctattt 35184592  T
Q  103 aattgtttcatgaactgttgtat 125  Q
    | |||||||||||||||||||||    
T  35184593 agttgtttcatgaactgttgtat 35184615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 4103645 - 4103755
Alignment:
Q  15 gtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttatttaattgtttcatg 114  Q
    |||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  4103645 gtcataacattgaaagtttatgttttgtttaatttatgaaatgcttcatattatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatg 4103744  T
Q  115 aactgttgtat 125  Q
    |||||||||||    
T  4103745 aactgttgtat 4103755  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 2468924 - 2468968
Alignment:
Q  28 aagtttatgttttatttaatttatgaaatgtttgacattatcact 72  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||    
T  2468924 aagtttatgttttgtttaatttatgaaatgcttgacattatcact 2468968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 21301760 - 21301636
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||     
T  21301760 tattgcctaaagtggtcataacgttgaaagtttatgttttgtttaatttatgaaatgcttgacattatcactatcaaagtttgttgatgttctgttttag 21301661  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    ||| |||||||||||||||||||||    
T  21301660 ttagttgtttcatgaactgttgtat 21301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 5404737 - 5404797
Alignment:
Q  28 aagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgat 88  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  5404737 aagtttatgttttgtttaatttatgaaatgcctgacattatcactgttaaagtttgttgat 5404797  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 48630658 - 48630780
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttat 100  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||  ||| ||||||    
T  48630658 tattgcctaaagaggtcataacattgaaagttt--gttttgtttaatttatgaaatgcttgacattatcactgtcaaagtttgtttatgttctattttat 48630755  T
Q  101 ttaattgtttcatgaactgttgtat 125  Q
    ||| |||||||||||||||||||||    
T  48630756 ttagttgtttcatgaactgttgtat 48630780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 14324321 - 14324383
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatactttt 195  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||   |||||||||||||    
T  14324321 tccatgcgatgattgacatctgttcagtatcaaaagctatatatgaccctgagtcatactttt 14324383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 10792030 - 10791960
Alignment:
Q  131 gctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10792030 gctccacgcgatgattgacatctgtccagtatcaaaagttatatatgactgcgagtcatacttttgctctt 10791960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 14683758 - 14683826
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||    
T  14683758 tccatgcgatgattgacatctgtccagtatcaaaagctatatatgaccctgagtcatacttttactctt 14683826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 7342075 - 7342121
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 179  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  7342075 tccatgcgatgattgacatctgtccaatatcaaaagctatatatgac 7342121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 41369265 - 41369333
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  41369265 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactatgagtcatacttttgctctt 41369333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 22085925 - 22085857
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  22085925 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 22085857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 46878 - 46946
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  46878 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 46946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 51516 - 51584
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  51516 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 51584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 24950656 - 24950588
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||   |||||||| |||| |||||    
T  24950656 tccatgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcatatttttactctt 24950588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3311 - 3347
Alignment:
Q  1 tattgcctaaagaggtcataacattgaaagtttatgt 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3311 tattgcgtaaagaggtcataacattgaaagtttatgt 3347  T

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Target: scaffold0193 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 27373 - 27437
Alignment:
Q  138 gcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctcttt 202  Q
    ||||| ||||||||||||| | ||||||| ||||||||||||   ||||||||||||| ||||||    
T  27373 gcgatcattgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactcttt 27437  T

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Target: scaffold0323 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 4054 - 4011
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatat 176  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||    
T  4054 tccatgcgatgattgacatctgtccaatatcaaaggctatatat 4011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 79321 - 79275
Alignment:
Q  133 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 179  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||    
T  79321 tccatgcgatgattgacatctgtccaacatcaaaggctatatatgac 79275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1701 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1457 - 1413
Alignment:
Q  157 cagtatcaaaagctatatatgactgcgagtcatacttttgctctt 201  Q
    |||||||||||||||||||||||   ||||||||||||| |||||    
T  1457 cagtatcaaaagctatatatgaccctgagtcatacttttactctt 1413  T

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