View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16349_high_1 (Length: 612)
Name: NF16349_high_1
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16349_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 204 - 500
Target Start/End: Complemental strand, 5599841 - 5599545
Alignment:
| Q |
204 |
ggattttcaacgtcgacgggaggtttgtttttgtgggtcttcagctatgttattttctgttttgcggttgttcggagattaggtgacgactttagatcta |
303 |
Q |
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| T |
5599841 |
ggattttcaacgtcgccgggaggtttgtttttgtgggtcttcagctatgttattttctgttttatggttgttcggagattaggtgacaactttagattta |
5599742 |
T |
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| Q |
304 |
tacatttgtggtggataggtttcgtaaactgaaagggtatagttcttttaactcgaaagtgtttgttggttatgaacgtatcgaagtcatccctcaatct |
403 |
Q |
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| T |
5599741 |
tacatttgtggtggataggtttcgtaaactaaaagggtatagtttttttaactcgaaagtgtttgttggttatgaacgtatcgaagtcatccctcaatct |
5599642 |
T |
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| Q |
404 |
aaatttttacgcgttgaattgaaatcagttgtttttgtagtttatacctttgattctctaatgctccggatctgttaatatctacaggtctcaaggc |
500 |
Q |
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| T |
5599641 |
aagttattatgcgttgaattgaaatcagttgtttttgtagtttatacctttgattctctgatgctccgaatctgttaatatctgcaggtctcaaggc |
5599545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 5600054 - 5600009
Alignment:
| Q |
20 |
gttctcttacaattccataaacatttgtcgtcttcctgacaagtgc |
65 |
Q |
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| T |
5600054 |
gttcttttacaattccataaacctttgtcgtcttcctgacaagtgc |
5600009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 553
Target Start/End: Complemental strand, 1763499 - 1763470
Alignment:
| Q |
524 |
attgttatgctcgaaagagcttttatactt |
553 |
Q |
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| T |
1763499 |
attgttatgctcgaaagagcttttatactt |
1763470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 560
Target Start/End: Complemental strand, 1764337 - 1764301
Alignment:
| Q |
524 |
attgttatgctcgaaagagcttttatacttgatgctt |
560 |
Q |
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| T |
1764337 |
attgttatgctcgaaagagcttttataattgttgctt |
1764301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 588
Target Start/End: Original strand, 24099374 - 24099654
Alignment:
| Q |
312 |
tggtggataggtttcgtaaact-gaaagggtatagttcttttaactcgaaagtgtttgttggttatgaacgtatcgaagtcatccctcaatctaaatttt |
410 |
Q |
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| T |
24099374 |
tggtggataggtttcgcaaacccgaaagggtatggttttattaacccgaaagggtctgttggttattaacgtattgaactcatccctcgatctgagtttt |
24099473 |
T |
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| Q |
411 |
tacgcgttgaattgaaatcagttgt-ttttgtagtttatacctttgattctctaatgctccggatctgttaatatctacaggtctcaag--gcgtcgggc |
507 |
Q |
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| T |
24099474 |
tacgcgtcggattgaaatcggttgtgtgttggtgtttgaagctttgattctatgatgtttcgaatctgttgagattcgcaggtatcaagacgtgtcagac |
24099573 |
T |
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| Q |
508 |
atgcctttactccaatattgttatgctcgaaagagcttttatacttgatgc-ttggtcattgagttgttagtacgtggattt |
588 |
Q |
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| T |
24099574 |
atg-ctttactccgatactgttatgctcgaaagagcttttacacttgttgctttggtcagggagttgatggttcgtggattt |
24099654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 512 - 589
Target Start/End: Complemental strand, 43335372 - 43335294
Alignment:
| Q |
512 |
ctttactccaatattgttatgctcgaaagagcttttatacttgatgc-ttggtcattgagttgttagtacgtggatttt |
589 |
Q |
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| T |
43335372 |
ctttactccgatattgttatgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggatttt |
43335294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 43335544 - 43335457
Alignment:
| Q |
312 |
tggtggataggtttcgtaaact-gaaagggtatagttcttttaactcgaaagtgtttgttggttatgaacgtatcgaagtcatccctc |
398 |
Q |
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| T |
43335544 |
tggtggataggtttcgcaaactcgaaagggtatggttctgttaactcgaaagggtcagttggttattaacatattgaactcatccctc |
43335457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 27495540 - 27495487
Alignment:
| Q |
507 |
catgcctttactccaatattgttatgctcgaaagagcttttatacttgatgctt |
560 |
Q |
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| T |
27495540 |
catgcctttactccgatactattatgtttgaaagagcttttatacttgctgctt |
27495487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 313 - 588
Target Start/End: Original strand, 30257376 - 30257653
Alignment:
| Q |
313 |
ggtggataggtttcgtaaac-tgaaagggtatagttcttttaactcgaaagtgtttgttggttatgaacgtatcgaagtcatccctcaatctaaattttt |
411 |
Q |
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| T |
30257376 |
ggtggataggtttcgcaaacctgaaaaggtatggttttattaacctgaaagggtctgtaggttattaacgtattgaactcatccctcgatctgagttttt |
30257475 |
T |
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| Q |
412 |
acgcgttgaattgaaatcagttgtttttgtagtttatacctttgattctctaatgctccggatctgttaatatctacaggtctcaag--gcgtcgggcat |
509 |
Q |
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| T |
30257476 |
acgcgtcagattgaaattgattgtgttggt-gtttgaagctttgattctctgatgttccgaatctgttgacattcgcaagtatcaagacgcgtcagacat |
30257574 |
T |
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| Q |
510 |
gcctttactccaatattgttatgctcgaaagagcttttatacttgatgc-ttggtcattgagttgttagtacgtggattt |
588 |
Q |
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| T |
30257575 |
gc-tttactccgatactgttatgctcgaaagagcttttatacttgctgctttggttagggagttgtttgttcgtggattt |
30257653 |
T |
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