View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16349_high_6 (Length: 221)
Name: NF16349_high_6
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16349_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 52952215 - 52952417
Alignment:
| Q |
10 |
tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc |
109 |
Q |
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| T |
52952215 |
tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgcccaaacacacaagacaatatagcgtcaaaataatggagtatc |
52952314 |
T |
|
| Q |
110 |
aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52952315 |
aatcgaaatggtacaagaggaagagagtgaataatttatcgtcacatcattaaaatcacatattagtcaaagtttttaaaatggaggccaaaattgtgca |
52952414 |
T |
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| Q |
210 |
att |
212 |
Q |
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||| |
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| T |
52952415 |
att |
52952417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 31923212 - 31923011
Alignment:
| Q |
10 |
tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31923212 |
tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagtgtcaaaataatggagtatc |
31923114 |
T |
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| Q |
110 |
aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca |
209 |
Q |
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|||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31923113 |
aatcgaaatggtacaagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca |
31923014 |
T |
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| Q |
210 |
att |
212 |
Q |
| |
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||| |
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| T |
31923013 |
att |
31923011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 31672425 - 31672626
Alignment:
| Q |
10 |
tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc |
109 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
31672425 |
tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagcgtcaaaataatggagtatc |
31672523 |
T |
|
| Q |
110 |
aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca |
209 |
Q |
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|||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31672524 |
aatcgaaatggtacaagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca |
31672623 |
T |
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| Q |
210 |
att |
212 |
Q |
| |
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||| |
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| T |
31672624 |
att |
31672626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 31905284 - 31905083
Alignment:
| Q |
10 |
tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc |
109 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||| ||| |||| |||||| ||||| ||||||||||||||||||| |
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| T |
31905284 |
tcgaagagaatcgaacattagatctcgatagttttggctctttggtttcttaggttgctcaaccacataagaca-tatagcgtcaaaataatggagtatc |
31905186 |
T |
|
| Q |
110 |
aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca |
209 |
Q |
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||||||||||||| |||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31905185 |
aatcgaaatggtataagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca |
31905086 |
T |
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| Q |
210 |
att |
212 |
Q |
| |
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||| |
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| T |
31905085 |
att |
31905083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 10565602 - 10565654
Alignment:
| Q |
107 |
atcaatcgaaatggtacaagaggaagagagtgaataatttattgccacatcat |
159 |
Q |
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|||||| |||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
10565602 |
atcaattgaaatgatacaagaggttgagagtgaacaatttattgccacatcat |
10565654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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