View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16349_low_10 (Length: 205)

Name: NF16349_low_10
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16349_low_10
NF16349_low_10
[»] chr6 (6 HSPs)
chr6 (14-197)||(17576475-17576658)
chr6 (14-197)||(17605092-17605275)
chr6 (71-191)||(21628937-21629057)
chr6 (47-197)||(15955774-15955924)
chr6 (14-109)||(26511502-26511597)
chr6 (14-109)||(26516618-26516713)
[»] chr5 (4 HSPs)
chr5 (14-197)||(25856197-25856380)
chr5 (95-197)||(33384812-33384914)
chr5 (47-109)||(12833188-12833250)
chr5 (47-109)||(12865166-12865228)
[»] chr8 (2 HSPs)
chr8 (14-197)||(20825499-20825682)
chr8 (17-177)||(13878248-13878408)
[»] chr3 (2 HSPs)
chr3 (14-191)||(12333846-12334023)
chr3 (17-181)||(19891892-19892055)
[»] chr2 (2 HSPs)
chr2 (17-181)||(33514954-33515118)
chr2 (47-109)||(20946380-20946442)
[»] scaffold1350 (1 HSPs)
scaffold1350 (32-181)||(759-910)
[»] chr4 (4 HSPs)
chr4 (38-181)||(55724521-55724664)
chr4 (47-109)||(20508762-20508824)
chr4 (53-114)||(17825559-17825620)
chr4 (48-132)||(16295312-16295396)
[»] scaffold0032 (1 HSPs)
scaffold0032 (53-93)||(57179-57219)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 17576475 - 17576658
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17576475 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctccttttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 17576574  T
Q  114 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatgatg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17576575 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgctgatg 17576658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 17605092 - 17605275
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 113  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||||||| |     
T  17605092 acagatgagtaccctctagagcgaggtttacgtcagggtgaccctctctctcctttcttgtttttgttagctgcagaagggttaaatgtgttgatgaaag 17605191  T
Q  114 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatgatg 197  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||| |||| |||||    
T  17605192 ccatggttgaagcaaatgtctttacgggttacagtgtgggaggcgctaatccggtagtggtgtctcatcttcaatttgctgatg 17605275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 21628937 - 21629057
Alignment:
Q  71 ttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcg 170  Q
    ||||||||||||||||| |||||||||||| | ||||||| | | ||||||||||| |||||||||||||||||||||||||| ||| ||||| |||| |    
T  21628937 ttgtttttgttagctgcagaagggttaaatatcttgatgaaagctatggttgaagcaaatgtctttacgggttacagtgtgggaggcgctaattctgtag 21629036  T
Q  171 tggtgtctcatcttcagtttg 191  Q
    |||||||||||||||| ||||    
T  21629037 tggtgtctcatcttcaatttg 21629057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 15955774 - 15955924
Alignment:
Q  47 cagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttaca 146  Q
    |||||||||||||| ||| |  |||||||||| ||||| |  |||||||| ||||| ||||||| | | ||||||||||| ||| | |||||||| | |     
T  15955774 cagggtgaccctctatctgcctttttgtttttattagcagtagaagggttgaatgttttgatgaaaacaatggttgaagcaaatatatttacggggtgct 15955873  T
Q  147 gtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatgatg 197  Q
     |||||| ||| ||||| | || |  ||||||||||||||||||| |||||    
T  15955874 ctgtggggggcgctaattcagtggctgtgtctcatcttcagtttgctgatg 15955924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 26511597 - 26511502
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    ||||| |||||||||||  | || || ||||| || || ||||||||||||||  || |||||||||||||||| || ||| | ||||||||||||    
T  26511597 acagaagagttccctttgcaacgggggttacgtcaaggagaccctctttctccgtttctgtttttgttagctgcggaggggatgaatgtgttgatg 26511502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 26516713 - 26516618
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    ||||| |||||||||||  | || || ||||| || || ||||||||||||||  || |||||||||||||||| || ||| | ||||||||||||    
T  26516713 acagaagagttccctttgcaacgggggttacgtcaaggagaccctctttctccgtttctgtttttgttagctgcggaggggatgaatgtgttgatg 26516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 25856197 - 25856380
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25856197 acagatgagttcccgttagagcgaggtttacgacagggtgaccctctttctccttttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 25856296  T
Q  114 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatgatg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25856297 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgctgatg 25856380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 33384812 - 33384914
Alignment:
Q  95 ttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatg 194  Q
    |||||||||||||||| | ||||||||||||| | ||||||||| |||||||||||||| ||| ||||||| || ||||||||||||||||| |||| ||    
T  33384812 ttaaatgtgttgatgaaagccatggttgaagcaagtgtctttacaggttacagtgtgggaggcgctaatccagtagtggtgtctcatcttcaatttgctg 33384911  T
Q  195 atg 197  Q
    |||    
T  33384912 atg 33384914  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 12833250 - 12833188
Alignment:
Q  47 cagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    |||||||| |||||||| ||| | ||||||||| ||||||| ||||||||  |||||||||||    
T  12833250 cagggtgatcctctttcgcctttcttgtttttgctagctgcggaagggtttcatgtgttgatg 12833188  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 12865228 - 12865166
Alignment:
Q  47 cagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    |||||||| |||||||| ||| | ||||||||| ||||||| ||||||||  |||||||||||    
T  12865228 cagggtgatcctctttcgcctttcttgtttttgctagctgcggaagggtttcatgtgttgatg 12865166  T

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Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 20825682 - 20825499
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 113  Q
    |||||||||||||||||| || ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20825682 acagatgagttccctttaaagtgaggtttacgatagggagaccctctttctccttttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 20825583  T
Q  114 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgatgatg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20825582 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttgctgatg 20825499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 13878248 - 13878408
Alignment:
Q  17 gatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatcca 116  Q
    |||||||||||| | ||||| |||||||| |||||||| |||||||||||  | ||||| |||||||| ||||||||  | |||||| |||||| | ||     
T  13878248 gatgagttccctcttgagcggggtttacggcagggtgatcctctttctcccttcttgttcttgttagcagctgaaggtctgaatgtgctgatgaaagcct 13878347  T
Q  117 tggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtc 177  Q
    |||||   ||  |||| || ||||| ||||||||||| ||  ||||||| || ||||||||    
T  13878348 tggttactgcagatgttttcacggggtacagtgtggggggtgctaatccggtagtggtgtc 13878408  T

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Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 12333846 - 12334023
Alignment:
Q  14 acagatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacat 113  Q
    |||||||||||| || |||||||||||||||| |||||||||||||| |||||| | |||||| |||||||||| |||||||||||||||||||||| |     
T  12333846 acagatgagttctctctagagcgaggtttacgtcagggtgaccctctctctcctttcttgtttctgttagctgcagaagggttaaatgtgttgatgaaag 12333945  T
Q  114 ccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcatcttcagtttg 191  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||    
T  12333946 ccatggttgaaggaaatgtctttacgggttacagtgtgggaggcgctaatcctgtagtggtgtctcatcttcaatttg 12334023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 19892055 - 19891892
Alignment:
Q  17 gatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatcca 116  Q
    |||||||| ||| |||| |  |||||| | |||||||||||||| |||||| | |||||||||||||| || ||||| || |||||| |||||| | ||     
T  19892055 gatgagtttcctctagaacagggtttaagtcagggtgaccctctatctcctttcttgtttttgttagcagcagaaggtttgaatgtggtgatgaaagcct 19891956  T
Q  117 tggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcat 181  Q
    |||||||||| |||||||||||||| ||||| ||||| ||| |||||| ||| ||| ||||||||    
T  19891955 tggttgaagcaaatgtctttacgggatacagagtggg-ggcgctaatcttgtagtgatgtctcat 19891892  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 33514954 - 33515118
Alignment:
Q  17 gatgagttccctttagagcgaggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatcca 116  Q
    |||||||| ||| | ||||| |||||| | |||||||| ||||| |||||  | ||||| || ||||| ||||||||  | ||||| ||||||| | ||     
T  33514954 gatgagtttcctcttgagcggggtttatgtcagggtgatcctctatctcccttcttgttcttcttagcagctgaaggtctgaatgtcttgatgaaagcct 33515053  T
Q  117 tggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcat 181  Q
    ||||||| || ||||| || ||||||||||||||||| |||  |||||| || ||||||||||||    
T  33515054 tggttgatgcaaatgttttcacgggttacagtgtggggggcgataatccagtagtggtgtctcat 33515118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 20946380 - 20946442
Alignment:
Q  47 cagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    ||||||||||||||||| ||  | |||||| | |||||||||||||||||  |||||||||||    
T  20946380 cagggtgaccctctttcaccgttcttgtttcttttagctgctgaagggtttcatgtgttgatg 20946442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 910 - 759
Alignment:
Q  32 gagcgaggtttacgacagggtgaccctctttctcc--tgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaa 129  Q
    ||||| |||||||| ||||||||||||||||| ||  | |||||||||||||||| ||  ||||  | ||||||||||||  | || |||| ||||| ||    
T  910 gagcggggtttacgtcagggtgaccctctttccccccttttttgtttttgttagcagcataaggactcaatgtgttgatgcaagccttggtggaagcaaa 811  T
Q  130 tgtctttacgggttacagtgtgggtggcactaatcctgtcgtggtgtctcat 181  Q
    | |||||||||| ||||  ||||| ||| ||||||  || || |||||||||    
T  810 tatctttacgggatacaaggtggggggcgctaatctagtagtagtgtctcat 759  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 55724521 - 55724664
Alignment:
Q  38 ggtttacgacagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtcttta 137  Q
    |||||||| |||||||||||||| || ||  |||||||||||||||| || ||||   | ||||||||||||| | || || | ||||| ||| | || |    
T  55724521 ggtttacgtcagggtgaccctctatccccctttttgtttttgttagcagcagaagaactcaatgtgttgatgaaagccttgatggaagcaaatatattca 55724620  T
Q  138 cgggttacagtgtgggtggcactaatcctgtcgtggtgtctcat 181  Q
    |||| ||||| ||||| ||| ||||||| || || |||||||||    
T  55724621 cgggatacagggtggggggcgctaatccagtagtagtgtctcat 55724664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 20508762 - 20508824
Alignment:
Q  47 cagggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatg 109  Q
    |||||||| |||||||| ||| | ||||||||| ||||||| ||||||||  |||||||||||    
T  20508762 cagggtgatcctctttcgcctttcttgtttttgctagctgcggaagggtttcatgtgttgatg 20508824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 17825559 - 17825620
Alignment:
Q  53 gaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatc 114  Q
    ||||||||||| ||  |||||||||||||||||||||||||  | |||||| ||||| ||||    
T  17825559 gaccctctttccccatttttgtttttgttagctgctgaaggtcttaatgtgatgatgtcatc 17825620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 16295312 - 16295396
Alignment:
Q  48 agggtgaccctctttctcctgttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgt 132  Q
    ||||||||||| | || ||| | |||||||||||||| |||||||| ||| ||||| ||||||  | |||||| |||| ||||||    
T  16295312 agggtgaccctttgtcgcctttcttgtttttgttagcggctgaaggcttacatgtgatgatgaattgcatggtggaagacaatgt 16295396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 57179 - 57219
Alignment:
Q  53 gaccctctttctcctgttttgtttttgttagctgctgaagg 93  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  57179 gaccctctttctccgtttttgtttttgttagctgttgaagg 57219  T

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