View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16349_low_3 (Length: 452)
Name: NF16349_low_3
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16349_low_3 |
 | |
|
| [»] chr8 (13 HSPs) |
| |
|
| [»] scaffold0363 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 452
Target Start/End: Complemental strand, 13165605 - 13165159
Alignment:
| Q |
6 |
atgtccaagaatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagcta |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
13165605 |
atgtccaaaaatatatttttctctttatcatccaattcattataactccatcttagtatcctatcaatttcggcattggaaattttctccagtttagaca |
13165506 |
T |
|
| Q |
106 |
gtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgctctttttga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13165505 |
gtgcacaattccattctatttcacttttgcaacgaagtgatgatcccaaaactttcagagctaaagggatgcctttggcgtaatcaatcgctctttttga |
13165406 |
T |
|
| Q |
206 |
gaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaacttcataaatt |
305 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13165405 |
gagctccacaaatccctccttagggaagacagtgtcaaaagcattcaagcagaaaagctggagggaattttgggagttcatcttcttaacttcataaatt |
13165306 |
T |
|
| Q |
306 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13165305 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
13165206 |
T |
|
| Q |
406 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13165205 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
13165159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 452
Target Start/End: Complemental strand, 32633991 - 32633545
Alignment:
| Q |
6 |
atgtccaagaatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagcta |
105 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||| ||||| || || |||||||| |
|
|
| T |
32633991 |
atgtccagaaatatgtttttctctttatcatctaattcattataactccatctcattatcttatcgatttctgcattgggaatttccttcagtttagcta |
32633892 |
T |
|
| Q |
106 |
gtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgctctttttga |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||| |||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||| ||| |
|
|
| T |
32633891 |
atgcacagttccattctatttcacttttgctacaaagaaatgatcccaaaacttttagagctaaagggttgcctttggcgtaatcaatcactctttctga |
32633792 |
T |
|
| Q |
206 |
gaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaacttcataaatt |
305 |
Q |
| |
|
||| |||||| ||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||| || |||| |
|
|
| T |
32633791 |
gagctccacatatccctccttaggtaagactttgtcaaaagcattgaagctgaaaagctggagggagtttcgagagttcatttctttaacttgatgaatt |
32633692 |
T |
|
| Q |
306 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
405 |
Q |
| |
|
| |||||||||||||| | |||||||||||||||||| ||||| ||||||||| |||||||| |||||| |||||||| || |||||||||||||||| |
|
|
| T |
32633691 |
ttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccgactccaatcaagtttt |
32633592 |
T |
|
| Q |
406 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
| ||||||||| | ||||| || |||||||||||||||||||||||| |
|
|
| T |
32633591 |
gcagaagttccaaagtatgaacatcatctagtacaatgaaagatttc |
32633545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 452
Target Start/End: Original strand, 6309847 - 6310293
Alignment:
| Q |
6 |
atgtccaagaatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagcta |
105 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||||| |||| | ||| ||| ||||| | || | ||||| | || |||||| | |
|
|
| T |
6309847 |
atgtctaaaaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
6309946 |
T |
|
| Q |
106 |
gtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgctctttttga |
205 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||| |||||||||| ||||||| ||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
6309947 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactttcaaagctaaaggatttcctttggcataatcaactgctctttttga |
6310046 |
T |
|
| Q |
206 |
gaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaacttcataaatt |
305 |
Q |
| |
|
||| |||||| |||| |||||||| |||| | ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
6310047 |
gagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaatt |
6310146 |
T |
|
| Q |
306 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
405 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
6310147 |
ttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctactccaatcaagtttt |
6310246 |
T |
|
| Q |
406 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
| |||||||| || ||||||| ||||||| |||||||||||||||| |
|
|
| T |
6310247 |
gcagaagttctgaattatgtacatcatctattacaatgaaagatttc |
6310293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 452
Target Start/End: Complemental strand, 14405441 - 14404995
Alignment:
| Q |
6 |
atgtccaagaatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagcta |
105 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| ||||||| |||| | ||| ||| |||||| || | |||||| | || |||||||| |
|
|
| T |
14405441 |
atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta |
14405342 |
T |
|
| Q |
106 |
gtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgctctttttga |
205 |
Q |
| |
|
|||||| | |||||| ||||||||||| |||||||| | |||||||| ||||||| |||||| ||| | || ||||||||||||| ||||||||||| |
|
|
| T |
14405341 |
atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga |
14405242 |
T |
|
| Q |
206 |
gaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaacttcataaatt |
305 |
Q |
| |
|
||| |||||| |||| ||||||||| |||| ||||||||||||||| || ||||||| | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14405241 |
gagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt |
14405142 |
T |
|
| Q |
306 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
405 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14405141 |
ttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtcccactccaatcaagtttt |
14405042 |
T |
|
| Q |
406 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
| |||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
14405041 |
gaagaagttctgaattatgtacatcatctagtacaatgaaagatttc |
14404995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 98 - 452
Target Start/End: Original strand, 5607508 - 5607862
Alignment:
| Q |
98 |
tttagctagtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgct |
197 |
Q |
| |
|
|||| ||| |||||||| ||||||| |||||||||| |||||||| |||||||||| ||||||| |||||||||| | ||| ||||||||||||| ||| |
|
|
| T |
5607508 |
tttatctaatgcacaatcccattctttttcacttttacaacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgct |
5607607 |
T |
|
| Q |
198 |
ctttttgagaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaactt |
297 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5607608 |
ctttttgagagctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaactt |
5607707 |
T |
|
| Q |
298 |
cataaatt-tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaa |
396 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
5607708 |
catatattgtctt-aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaa |
5607806 |
T |
|
| Q |
397 |
tcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
5607807 |
tcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttc |
5607862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 98 - 452
Target Start/End: Complemental strand, 5627862 - 5627508
Alignment:
| Q |
98 |
tttagctagtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgct |
197 |
Q |
| |
|
|||| ||| |||||||| ||||||| |||||||||| |||||||| |||||||||| ||||||| |||||||||| | ||| ||||||||||||| ||| |
|
|
| T |
5627862 |
tttatctaatgcacaatcccattctttttcacttttacaacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgct |
5627763 |
T |
|
| Q |
198 |
ctttttgagaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaactt |
297 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5627762 |
ctttttgagagctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaactt |
5627663 |
T |
|
| Q |
298 |
cataaatt-tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaa |
396 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
5627662 |
catatattgtctt-aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaa |
5627564 |
T |
|
| Q |
397 |
tcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
5627563 |
tcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttc |
5627508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 98 - 452
Target Start/End: Complemental strand, 5550421 - 5550067
Alignment:
| Q |
98 |
tttagctagtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgct |
197 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| |||| |||| ||| |||||||||| |||| | |||||||||| | ||| ||||||||||||| ||| |
|
|
| T |
5550421 |
tttagctgatgcacaatcccattctttttcatttttacaactaagtaatgatcccaatacttgtaaagctaaagggtttcctctggcataatcaattgct |
5550322 |
T |
|
| Q |
198 |
ctttttgagaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaactt |
297 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||| ||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5550321 |
ctttttgagagctccacatatccatccttaggtgagactttgttaaaagcattcaaacaaaaaagtcggagggaatttcgggagttcatcttcttaactt |
5550222 |
T |
|
| Q |
298 |
cataaatt-tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaa |
396 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
5550221 |
catatattgtctt-aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaa |
5550123 |
T |
|
| Q |
397 |
tcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
5550122 |
tcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttc |
5550067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 258 - 452
Target Start/End: Complemental strand, 5571844 - 5571650
Alignment:
| Q |
258 |
aaaagctggagggaatttcgggagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatga |
357 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5571844 |
aaaagttggagggaattttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatga |
5571745 |
T |
|
| Q |
358 |
ctgtgctaccagctcctaaccaaccatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|| ||||||||| ||| | ||||||| || |||||||||||||| ||| |||||||| ||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
5571744 |
ctatgctaccaggtccaagccaaccacctctcactccaatcaagtcttgcagaagttcagagttatgtacatcatctaatacaatgaaagatttc |
5571650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 452
Target Start/End: Original strand, 12176952 - 12177125
Alignment:
| Q |
279 |
gagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaacc |
378 |
Q |
| |
|
|||||||| | |||||||| || |||||| ||||||||||| | | ||| |||||||||||| || || |||||||||||| |||||||| |||| | | |
|
|
| T |
12176952 |
gagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctaccaactccaaggc |
12177051 |
T |
|
| Q |
379 |
aaccatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|| |||| || |||||||||| || | ||||||||| | ||| | || ||||||||||||||||||| |||| |
|
|
| T |
12177052 |
aatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaatgaaagctttc |
12177125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 452
Target Start/End: Original strand, 12421380 - 12421553
Alignment:
| Q |
279 |
gagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaacc |
378 |
Q |
| |
|
|||||||| | |||||||| || |||||| ||||||||||| | | ||| |||||||||||| || || |||||||||||| |||||||| |||| | | |
|
|
| T |
12421380 |
gagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctaccaactccaaggc |
12421479 |
T |
|
| Q |
379 |
aaccatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|| |||| || |||||||||| || | ||||||||| | ||| | || ||||||||||||||||||| |||| |
|
|
| T |
12421480 |
aatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaatgaaagctttc |
12421553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 452
Target Start/End: Original strand, 12188276 - 12188446
Alignment:
| Q |
282 |
ttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaac |
381 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||||||||| | ||| ||||| |||||| || || |||||||||||| ||||||||||||| | ||| |
|
|
| T |
12188276 |
ttcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctggttgtcacaatgactctgctaccagctccaaggcaat |
12188375 |
T |
|
| Q |
382 |
catgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|||| || |||||||||| || | ||||||||| | || | || ||||||||||||||||||| |||| |
|
|
| T |
12188376 |
catgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatgaaagctttc |
12188446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 452
Target Start/End: Original strand, 12432704 - 12432874
Alignment:
| Q |
282 |
ttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaac |
381 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||||||||| | ||| ||||| |||||| || || |||||||||||| ||||||||||||| | ||| |
|
|
| T |
12432704 |
ttcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctggttgtcacaatgactctgctaccagctccaaggcaat |
12432803 |
T |
|
| Q |
382 |
catgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
|||| || |||||||||| || | ||||||||| | || | || ||||||||||||||||||| |||| |
|
|
| T |
12432804 |
catgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatgaaagctttc |
12432874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 452
Target Start/End: Original strand, 9394119 - 9394291
Alignment:
| Q |
280 |
agttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaacca |
379 |
Q |
| |
|
||||||| | |||||||| | |||||| ||||| |||| | ||||| |||||||||||| || || |||||||| || ||||||||||||| | || |
|
|
| T |
9394119 |
agttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatctctggttgtcacaatttctctgctaccagctccaaggca |
9394218 |
T |
|
| Q |
380 |
accatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
| |||| || ||||||||||| |||| |||||||| | ||||| | ||| |||||||||||||||| |||| |
|
|
| T |
9394219 |
atcatgccctactccaatcaaattttctagaagttttaaagtatgaatgtcgtctagtacaatgaaagctttc |
9394291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 452
Target Start/End: Original strand, 13412 - 13858
Alignment:
| Q |
6 |
atgtccaagaatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagcta |
105 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| ||||||| |||| | ||| ||| |||||| || | |||||| | || |||||||| |
|
|
| T |
13412 |
atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta |
13511 |
T |
|
| Q |
106 |
gtgcacaattccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataatcaatcgctctttttga |
205 |
Q |
| |
|
|||||| | |||||| ||||||||||| |||||||| | |||||||| ||||||| |||||| ||| | || ||||||||||||| ||||||||||| |
|
|
| T |
13512 |
atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga |
13611 |
T |
|
| Q |
206 |
gaggtccacaaatccctccttaggcaagacagtgtcaaaagcattcaagcagaaaagctggagggaatttcgggagttcatcttcttaacttcataaatt |
305 |
Q |
| |
|
||| |||||| |||| ||||||||| |||| ||||||||||||||| || ||||||| | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13612 |
gagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt |
13711 |
T |
|
| Q |
306 |
tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactccaatcaagtttt |
405 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13712 |
ttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtcccactccaatcaagtttt |
13811 |
T |
|
| Q |
406 |
gtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttc |
452 |
Q |
| |
|
| |||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
13812 |
gaagaagttctgaattatgtacatcatctagtacaatgaaagatttc |
13858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 19492705 - 19492777
Alignment:
| Q |
311 |
aattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaacca |
383 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
19492705 |
aattcctccacttttcagcacatcctcatccctagtagtcacaatgactatgctaccagctcctagccaacca |
19492777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 19492478 - 19492638
Alignment:
| Q |
72 |
atttcggcattggaaattttctccaatttagctagtgcacaattccattctatttcacttttgcaa---cgaagagatgatcccaaaactttcagagcta |
168 |
Q |
| |
|
|||| ||||||||| |||| || | ||| ||||||||||| ||||| || ||||||||| || || ||| || |||||| ||||||||||| ||||| |
|
|
| T |
19492478 |
attttggcattggagatttcctttagttttgctagtgcacatttccagtcgatttcacttgtgtaaagtcgatgaaatgatctcaaaactttcaaagcta |
19492577 |
T |
|
| Q |
169 |
aagggatgcctttggcataatcaatcgctctttttgagaggtccacaaatccctccttagg |
229 |
Q |
| |
|
|||| ||| ||| |||||| ||| ||| || |||| || |||| |||||||| |||||| |
|
|
| T |
19492578 |
tagggttgcaattgacataatgaattgcttttcttgaaagctccaaaaatccctgcttagg |
19492638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 42265594 - 42265767
Alignment:
| Q |
15 |
aatatatttttctctttatcatccaattcattataactccatctcagtatcctatcgatttcggcattggaaattttctccaatttagctagtgcacaat |
114 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||| |||||| | | | | ||||| ||||||||||||| || || |||| ||| |||| || |
|
|
| T |
42265594 |
aatatatttttctctgtatcatctaattcatcataacttaatctcaacaccttttgaatttcagcattggaaatttccttcagtttatttagagcactat |
42265693 |
T |
|
| Q |
115 |
tccattctatttcacttttgcaacgaagagatgatcccaaaactttcagagctaaagggatgcctttggcataa |
188 |
Q |
| |
|
||||||| ||| |||||| ||||||| |||| |||| |||||||| ||| ||| || ||||||| |||||| |
|
|
| T |
42265694 |
cccattcttttttactttttgtacgaagaaatgaacccagaactttcaaagccaaatggttgccttttgcataa |
42265767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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