View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16349_low_4 (Length: 443)
Name: NF16349_low_4
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16349_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 4 - 427
Target Start/End: Original strand, 51114946 - 51115369
Alignment:
| Q |
4 |
atgtcgaataatatttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttgcat |
103 |
Q |
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|||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114946 |
atgtagaacaatgtttcgcacgaagaggcctaacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttgcat |
51115045 |
T |
|
| Q |
104 |
tttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctcca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115046 |
tttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctcca |
51115145 |
T |
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| Q |
204 |
aaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgcact |
303 |
Q |
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| T |
51115146 |
aaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgcact |
51115245 |
T |
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| Q |
304 |
tgagtcctgataaaacaacgaagtcttcaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgattatg |
403 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115246 |
tgagtcctgataaaacaacgaagtctccaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgattatg |
51115345 |
T |
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| Q |
404 |
agaaacaagttgcgctggtgtaag |
427 |
Q |
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| T |
51115346 |
agaaacaagttgcgatggtgtaag |
51115369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 51105533 - 51105636
Alignment:
| Q |
119 |
atgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaagg |
218 |
Q |
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| T |
51105533 |
atgcccattcattctgatattacctggatccttggtgctacacctataagacatcaacaacccaacagtagctagtaacactccaaaccatgcaaaaagg |
51105632 |
T |
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| Q |
219 |
ccgg |
222 |
Q |
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|||| |
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| T |
51105633 |
ccgg |
51105636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 51105407 - 51105473
Alignment:
| Q |
17 |
tttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
83 |
Q |
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| T |
51105407 |
tttcgtacgaagaggcctgataatcttgcgtgttgcacaaatttgggaccaatttccagctagcaaa |
51105473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 48037342 - 48037243
Alignment:
| Q |
154 |
tgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgc |
253 |
Q |
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| T |
48037342 |
tgctacacctataaaacatcaccaatccaacagtagcaagcaacactccaaaccatgcaaagaggccagctgatgctgtcagctttggcatatttgttgc |
48037243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 48038384 - 48038337
Alignment:
| Q |
36 |
acaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
83 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48038384 |
acaaccttgcatgttgcacaaagttgggaccaatttccagctagcaaa |
48038337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 48038096 - 48038064
Alignment:
| Q |
119 |
atgcccattcattctgatataacctggatcctt |
151 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
48038096 |
atgcccattcgttctgatataacctggatcctt |
48038064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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