View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16349_low_5 (Length: 382)

Name: NF16349_low_5
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16349_low_5
NF16349_low_5
[»] chr5 (4 HSPs)
chr5 (1-367)||(12600142-12600507)
chr5 (72-308)||(15806268-15806502)
chr5 (1-72)||(15806184-15806252)
chr5 (124-176)||(30417261-30417313)
[»] chr8 (9 HSPs)
chr8 (72-308)||(3321258-3321493)
chr8 (72-195)||(3367136-3367259)
chr8 (133-289)||(3387849-3388004)
chr8 (4-55)||(3367052-3367103)
chr8 (1-51)||(3321176-3321226)
chr8 (124-175)||(3408028-3408079)
chr8 (86-175)||(3263211-3263300)
chr8 (143-196)||(3325705-3325758)
chr8 (7-55)||(3263116-3263164)
[»] chr3 (2 HSPs)
chr3 (1-71)||(6906373-6906443)
chr3 (304-341)||(6907018-6907055)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 12600507 - 12600142
Alignment:
Q  1 gttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtcaaggtaaatcctttccaatggactcgtct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12600507 gttttcttccaaacttgtttaatattactaagttttaagtcaataacaactagatttctttgataaaagtcaaggtaaatcctttccaatggactcgtct 12600408  T
Q  101 cgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacg 200  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12600407 cgagtcattagaaagacacttataatctctagtgaggtcaacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacg 12600308  T
Q  201 aaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaacatagaagtgtaaagcgaaaccatttttcgcttcctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12600307 aaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaacatagaagtgtaaagcgaaacca-ttttcgcttcctt 12600209  T
Q  301 gctagagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaacgaagtagat 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12600208 gctagagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaatgaagtagat 12600142  T

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Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 72 - 308
Target Start/End: Original strand, 15806268 - 15806502
Alignment:
Q  72 aaggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttct 171  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  15806268 aaggtaaatcctttccaatgtattcgtctcaggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtctc-gtttct 15806366  T
Q  172 tcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaacatagaag 271  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15806367 tcatcctttttaaagaatcagtactgacgaaaagttaaatgctttgcaaacttcaaagccaagtcatttacaggttctgtttcctacaaaaacatagaag 15806466  T
Q  272 tgtaaagcgaaaccatttttcgcttccttgctagaga 308  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  15806467 tgtaaagtgaaacca-ttttcgcttccttgctagaga 15806502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15806184 - 15806252
Alignment:
Q  1 gttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtca 72  Q
    |||||||||||||||||||| ||| ||||| ||||||||| |||||||   |||| ||||||||||||||||    
T  15806184 gttttcttccaaacttgttttatactactatgttttaagtcaataaca---agatttctttgataaaagtca 15806252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 30417313 - 30417261
Alignment:
Q  124 aatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatc 176  Q
    |||||| ||||||||| |||  |||||||||||||||| ||||||||||||||    
T  30417313 aatctccagtgaggtcaacacaatcaagttgtaaaagtctcagtttcttcatc 30417261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 72 - 308
Target Start/End: Original strand, 3321258 - 3321493
Alignment:
Q  72 aaggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttct 171  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  3321258 aaggtaaatcctttccaatgggctcgtctcaggtcattagaaagacacttataatctctagtgaggtccacatgatcaagttgtaaaagtctcattttct 3321357  T
Q  172 tcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgttt-cctacaaaaacatagaa 270  Q
    ||||||| ||||||||||| |||  ||  ||||||  | | || ||| ||||||||||||||||||| ||||| |||||||| |||| ||||||| ||||    
T  3321358 tcatcctctttaaagaatcggtaacgaaaaaaagtttacttctctgc-aacttcaaaaccaagtcatctacagtttctgtttccctataaaaacaaagaa 3321456  T
Q  271 gtgtaaagcgaaaccatttttcgcttccttgctagaga 308  Q
      |||| | ||| ||| ||| | |||||||||||||||    
T  3321457 aagtaaggtgaaccca-tttccacttccttgctagaga 3321493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 3367136 - 3367259
Alignment:
Q  72 aaggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttct 171  Q
    ||||||||||||||| ||||  |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| |||    
T  3367136 aaggtaaatcctttcgaatgagctcgtctcaggtcattagaaaaacacttaaaatctctagtgaggtcgacatgatcaaattgaaaaagtctcagtctct 3367235  T
Q  172 tcatcctttttaaagaatcagtac 195  Q
    |||||| ||| |||||| ||||||    
T  3367236 tcatccctttgaaagaaccagtac 3367259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 289
Target Start/End: Complemental strand, 3388004 - 3387849
Alignment:
Q  133 tgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaacca 232  Q
    |||||| |||||||||||||||| | ||  |||||||||||||||| ||||||||||||||||||| |||||||  | | || ||| |||||||||||||    
T  3388004 tgaggttgacatgatcaagttgtgacagactcagtttcttcatcctctttaaagaatcagtactgaagaaaagtttacttctctgc-aacttcaaaacca 3387906  T
Q  233 agtcatttacaggttctgtttcctacaaaaacatagaagtgtaaagcgaaaccattt 289  Q
    |||||| ||||| ||||||  |||| ||||||| ||||  |||| ||||||||||||    
T  3387905 agtcatctacagtttctgtcccctataaaaacaaagaaaagtaaggcgaaaccattt 3387849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 3367052 - 3367103
Alignment:
Q  4 ttcttccaaacttgtttaatattactaagttttaagtgaataacaactagat 55  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||    
T  3367052 ttcttccaaacttgtttaatactaccaagttttaagtcaataataactagat 3367103  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3321176 - 3321226
Alignment:
Q  1 gttttcttccaaacttgtttaatattactaagttttaagtgaataacaact 51  Q
    |||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  3321176 gttttcttccaaacttgtttaatactactatgttttacgtcaataacaact 3321226  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 3408028 - 3408079
Alignment:
Q  124 aatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcat 175  Q
    |||||| ||||||||| ||| ||||||||||||||||| | |||||||||||    
T  3408028 aatctccagtgaggtcaacacgatcaagttgtaaaagtctaagtttcttcat 3408079  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 3263211 - 3263300
Alignment:
Q  86 ccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcat 175  Q
    ||||||||| | |||| | || ||||||||| ||  |||||||| ||| ||||| |||| ||||||||||| |||| |||| ||||||||    
T  3263211 ccaatggacccatctcagttctttagaaagatacccataatctccagtcaggtccacattatcaagttgtagaagtctcagattcttcat 3263300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 3325705 - 3325758
Alignment:
Q  143 atgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtact 196  Q
    |||||||||||| |||||| ||||||||||||||   || ||||||||||||||    
T  3325705 atgatcaagttgcaaaagtctcagtttcttcatctccttgaaagaatcagtact 3325758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 3263116 - 3263164
Alignment:
Q  7 ttccaaacttgtttaatattactaagttttaagtgaataacaactagat 55  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||||| ||||    
T  3263116 ttccaaacttgtttgatattgctatgttttaagtcaataacaacgagat 3263164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6906373 - 6906443
Alignment:
Q  1 gttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtc 71  Q
    |||| ||||||||||||||||| ||| |||| |||||| |  | ||||||||||| || ||||||||||||    
T  6906373 gtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgataaaagtc 6906443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 6907055 - 6907018
Alignment:
Q  304 agagacatgggaggagaaattgtccgtggaagttcaac 341  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  6907055 agagacatgggaagagaaattgttcgtggaagttcaac 6907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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