View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16349_low_6 (Length: 313)
Name: NF16349_low_6
Description: NF16349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16349_low_6 |
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| [»] scaffold0608 (3 HSPs) |
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Alignment Details
Target: scaffold0608 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 6738 - 6916
Alignment:
| Q |
53 |
ttaactaattgatattttttgttcaaatggaaaaggacaaagcaaaacnnnnnnnncacaaactgactaaaagaaaatgtgtgtaac-----atggttgg |
147 |
Q |
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| T |
6738 |
ttaactaattgatattttttgttcaaatggaaaaggacaaagcaaaacttttttttcacaaactgactaaaagaaaatgtgtgtaacataacatggttgg |
6837 |
T |
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| Q |
148 |
tggatgaggtacggaaaaagaacgataatagcataatttagccaagtcaatggctttaacaagtcataatcatcatgca |
226 |
Q |
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| T |
6838 |
tggatgaggtacggaaaaagaacgataatagcataatttagccaagtcaatggctttaacaagtcataatcatcatgca |
6916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6514 - 6556
Alignment:
| Q |
1 |
atgaacacggatatgcgaacatgtattataatagcttgcccttt |
44 |
Q |
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| T |
6514 |
atgaacacggatatgcgaacatgt-ttataatagcttgcccttt |
6556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 4426 - 4386
Alignment:
| Q |
53 |
ttaactaattgatattttttgttcaaatggaaaaggacaaa |
93 |
Q |
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| T |
4426 |
ttaactaattgatattctttgttcaaatagaaaaagacaaa |
4386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 11111301 - 11111479
Alignment:
| Q |
53 |
ttaactaattgatattttttgttcaaatggaaaaggacaaagcaaaacnnnnnnnncacaaactgactaaaagaaaatgtgtgtaac-----atggttgg |
147 |
Q |
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| T |
11111301 |
ttaactaattgatattttttgttcaaatggaaaaggacaaagcaaaacttttttttcacaaactgactaaaagaaaatgtgtgtaacataacatggttgg |
11111400 |
T |
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| Q |
148 |
tggatgaggtacggaaaaagaacgataatagcataatttagccaagtcaatggctttaacaagtcataatcatcatgca |
226 |
Q |
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| T |
11111401 |
tggatgaggtacggaaaaagaacgataatagcataatttagccaagtcaatggctttaacaagtcataatcatcatgca |
11111479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11111077 - 11111119
Alignment:
| Q |
1 |
atgaacacggatatgcgaacatgtattataatagcttgcccttt |
44 |
Q |
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| T |
11111077 |
atgaacacggatatgcgaacatgt-ttataatagcttgcccttt |
11111119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 11108989 - 11108949
Alignment:
| Q |
53 |
ttaactaattgatattttttgttcaaatggaaaaggacaaa |
93 |
Q |
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| T |
11108989 |
ttaactaattgatattctttgttcaaatagaaaaagacaaa |
11108949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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