View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1634_high_17 (Length: 347)
Name: NF1634_high_17
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 53621515 - 53621202
Alignment:
| Q |
15 |
agcataggttttacaaacgctaaagtatgagcaatcaaaactgtaagcagatgcaacaagttacatgagtaaatatcaatattctgccaaaacctgcttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53621515 |
agcataggttttacaaacgctaaagtatgagcaatcaaaactgtaagcagatgcaacaagttacatgagtaaatatcaatattctgccaaaacctgcttc |
53621416 |
T |
|
| Q |
115 |
tttgtaagatggccaagcaaaggatgatccaatgaagtattgattctcgatataaataaaatgctgagcagatctgatggcatgtatgtaagctgtttga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53621415 |
tttgtaagatggccaagcaaaggatgatccaatgaagtattgattctcgatataaataaaatgctgagcagatctgatggcatgtatgtaagctgtttga |
53621316 |
T |
|
| Q |
215 |
atactcttgtctatgactaaatttttagcacaaacaagattctgcaatgagtggttgacaaattttttaattagtgaaagcgggaaaacacaaggctcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53621315 |
atactcttgtctatgactaaatttttagcacaaacaagattctgcaatgagtggttgacaaattttttaattagtgaaagcgggaaaacacaaggctcta |
53621216 |
T |
|
| Q |
315 |
taacatatagccat |
328 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
53621215 |
taacatatagccat |
53621202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 9154912 - 9154767
Alignment:
| Q |
116 |
ttgtaagatggccaagcaaaggatgatccaatgaagtattgattctcgatataaataaaatgctgagcagatctgatggcatgtatgtaagctgtttgaa |
215 |
Q |
| |
|
|||||||||||||| ||| | || |||||||| |||||||| || || |||||||| ||||| |||||||||||||| || || || || ||||||||| |
|
|
| T |
9154912 |
ttgtaagatggccatgcatatgaagatccaataaagtattggttttcaatataaatgaaatgttgagcagatctgatagcttggatatatcctgtttgaa |
9154813 |
T |
|
| Q |
216 |
tactcttgtctatgactaaatttttagcacaaacaagattctgcaa |
261 |
Q |
| |
|
| || || ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
9154812 |
tgcttttttctatagtcaaatttttagcacatatgagattctgcaa |
9154767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University