View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_high_18 (Length: 346)

Name: NF1634_high_18
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_high_18
NF1634_high_18
[»] chr2 (5 HSPs)
chr2 (51-183)||(43861958-43862085)
chr2 (143-218)||(43849118-43849193)
chr2 (51-201)||(43872099-43872249)
chr2 (263-313)||(43872294-43872344)
chr2 (258-300)||(43849221-43849263)
[»] chr3 (2 HSPs)
chr3 (198-247)||(742228-742277)
chr3 (198-247)||(752664-752713)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 43861958 - 43862085
Alignment:
Q  51 tcattaaaaggaggcattaaattttttgggcatatatactccataggtgatcggtctcgcgcagatcacttgctgtattgtaaacacagttagtagattc 150  Q
    ||||||||||||||||||||||||||||||||||    |||||||||| || || ||| |||| ||||||||||||||||||||||| ||||||||||||    
T  43861958 tcattaaaaggaggcattaaattttttgggcata----ctccataggttattgg-ctcacgcaaatcacttgctgtattgtaaacaccgttagtagattc 43862052  T
Q  151 agtaatgaacttcataatatttggtcattaact 183  Q
       ||||||||||||||||||||||||||||||    
T  43862053 tagaatgaacttcataatatttggtcattaact 43862085  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 43849118 - 43849193
Alignment:
Q  143 gtagattcagtaatgaacttcataatatttggtcattaacttgatttttcgacacaccatttccgatgttctttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  | ||||||||||||    
T  43849118 gtagattcagtaatgaacttcataatatttggtcattaacttgatttttcctcacaccatcactgatgttctttta 43849193  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 43872099 - 43872249
Alignment:
Q  51 tcattaaaaggaggcattaaattttttgggcatatatactccataggtgatcggtctcgcgcagatcacttgctgtattgtaaacac----agttagtag 146  Q
    |||||||||||| |||| ||| ||||||| ||||    ||||| ||||||| |||||   ||| ||||||||||||||||||| |||     ||||||||    
T  43872099 tcattaaaaggacgcatcaaactttttggacata----ctccacaggtgattggtctgatgcaaatcacttgctgtattgtaaccactgtttgttagtag 43872194  T
Q  147 attcagtaatgaacttcataatatttggtcattaacttgatttttcgacacacca 201  Q
    ||||   ||||||||||||||||||||||||| ||||| |||||||  |||||||    
T  43872195 attctacaatgaacttcataatatttggtcatgaacttaatttttcttcacacca 43872249  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 43872294 - 43872344
Alignment:
Q  263 agcatgttaactgaaccgatccctcctatgctcatatactactgttcttat 313  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  43872294 agcatgttaaccgaaccgatccctcccatgctcatatactaatgttcttat 43872344  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 43849221 - 43849263
Alignment:
Q  258 tttgaagcatgttaactgaaccgatccctcctatgctcatata 300  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  43849221 tttgtagcatgttaactgaactgatccctcctatactcatata 43849263  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 742228 - 742277
Alignment:
Q  198 accatttccgatgttcttttaccttgatcttattccaaattttcaatcca 247  Q
    |||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  742228 accattccagatgttcttttacattgatcttattccaaatttccaatcca 742277  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 752664 - 752713
Alignment:
Q  198 accatttccgatgttcttttaccttgatcttattccaaattttcaatcca 247  Q
    |||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  752664 accattccagatgttcttttacattgatcttattccaaatttccaatcca 752713  T

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