View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_high_34 (Length: 227)
Name: NF1634_high_34
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 38645395 - 38645591
Alignment:
| Q |
16 |
cctttgtcaaccccaccaccaccaataaaaccttctcgttttcctcttccaaagccactcttttatttctagattggtgatgtttcaaaaaccccaacta |
115 |
Q |
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| T |
38645395 |
cctttgtcaaccccaccaccaccaataaaaccttctcgttttcctcttccaaagccactcttttatttctagattggtgaagtttcaaaaaccccaacta |
38645494 |
T |
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| Q |
116 |
ccacattctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatctccttccttgtgatatctacaataaaacccctatg |
212 |
Q |
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| T |
38645495 |
ccacattctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatctccttccttgtgatatctacaataaaacctctatg |
38645591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 23484663 - 23484570
Alignment:
| Q |
98 |
tttcaaaaaccccaactaccacattctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatctccttccttgtgat |
191 |
Q |
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| T |
23484663 |
tttcaaaaatctcaaccaccaccttctctcttactttccggccaccttgaaccaccatttgagaaactaaatgcaccatcttcttccttgtgat |
23484570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 42193470 - 42193535
Alignment:
| Q |
78 |
ttatttctagattggtgatgtttcaaaaaccccaactaccacattctctcttacttttcggccacc |
143 |
Q |
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| T |
42193470 |
ttatttctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttactttccagccacc |
42193535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 22590143 - 22590015
Alignment:
| Q |
16 |
cctttgtcaaccccaccaccaccaataaaaccttctcgttttcctcttccaaagccactcttttatttctagattggtgat-gtttcaaaaaccccaact |
114 |
Q |
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|||||| |||||||||||| |||| |||| | | || | ||||||||| | | ||||| ||||||| ||||||||||| |||| ||| |||| || |
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| T |
22590143 |
cctttgacaaccccaccacaaccattaaattcctttcttcttcctcttcaataaccactaatttatttttagattggtgagagtttgaaatacccaaatc |
22590044 |
T |
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| Q |
115 |
accacattctctcttacttttcggccacc |
143 |
Q |
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||||| |||||||||||||| |||||||| |
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| T |
22590043 |
accaccttctctcttactttccggccacc |
22590015 |
T |
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