View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_high_5 (Length: 567)

Name: NF1634_high_5
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_high_5
NF1634_high_5
[»] chr4 (1 HSPs)
chr4 (19-563)||(26721602-26722138)
[»] chr1 (1 HSPs)
chr1 (19-563)||(45116784-45117308)
[»] chr2 (1 HSPs)
chr2 (19-563)||(2987069-2987594)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 26721602 - 26722138
Alignment:
Q  19 attatcactttttgttaatcttttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtagaaaaaatgaaccaagag 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||    
T  26721602 attatcaatttttgttaatcttttttagataaatttaattgcacccatcattatag---cattattgtgatgaaacgaagtagaaaaaatgaaccaaaag 26721698  T
Q  119 aagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatc 218  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  26721699 gagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatc 26721798  T
Q  219 actctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttatt 318  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||||||             ||||||||||||||||||||||||||||||||||||    
T  26721799 actctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcactttttttt-----atctcattctcttcttacttttaatttcattttatt 26721893  T
Q  319 ctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgagg 418  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26721894 ctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgagg 26721993  T
Q  419 ttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaa 518  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721994 ttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaa 26722093  T
Q  519 ccaaaaggcatcattccttctccaattaattttttcttctcactc 563  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  26722094 ccaaaaggcatcattccttctcaaattaattttttcttctcactc 26722138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Complemental strand, 45117308 - 45116784
Alignment:
Q  19 attatcactttttgttaatcttttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtagaaaaaa-tgaaccaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||| ||||||||||    
T  45117308 attatcactttttgttaatcttttttagataaatttaattgcacccatcattatag---cattattgtgatgaaacgaggtagaaaaaaatgaaccaaga 45117212  T
Q  118 gaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttat 217  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  45117211 ggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggctcat 45117112  T
Q  218 cactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttat 317  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||| ||||             |||||||||||||||||||||||||||||||||||    
T  45117111 cactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcac-----ttttttttatctcattctcttcttacttttaatttcattttat 45117017  T
Q  318 tctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgag 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  45117016 tctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatg------- 45116924  T
Q  418 gttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaa 517  Q
          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45116923 ------atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaa 45116830  T
Q  518 accaaaaggcatcattccttctccaattaattttttcttctcactc 563  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  45116829 accaaaaggcatcattccttctcaaattaattttttcttctcactc 45116784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 2987069 - 2987594
Alignment:
Q  19 attatcactttttgttaatcttttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtagaaaa-aatgaaccaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||    
T  2987069 attatcactttttgttaatcttttttagataaatttaattgcacccatcattatag---cattattgtgatgaaacgaagtagaaaaaaatgaaccaaga 2987165  T
Q  118 gaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttat 217  Q
    | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2987166 ggagaggatttcagttagattcacgacgacagaggatttcgtagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttat 2987265  T
Q  218 cactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttat 317  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||             |||||||||||||||||||||||||||||||||||    
T  2987266 cactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcac----tttttttttatctcattctcttcttacttttaatttcattttat 2987361  T
Q  318 tctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgag 417  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  2987362 tctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatg------- 2987454  T
Q  418 gttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaa 517  Q
          |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2987455 ------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaa 2987548  T
Q  518 accaaaaggcatcattccttctccaattaattttttcttctcactc 563  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2987549 accaaaaggcatcattccttctcaaattaattttttcttctcactc 2987594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University