View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_12 (Length: 411)
Name: NF1634_low_12
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 29770037 - 29769650
Alignment:
| Q |
16 |
atataaacccactatcacatcacaatcctagtagaattcacaaaacaaaaaagagtgttcattctcaacaaattctcatctcatcattatgactaacatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29770037 |
atataaacccactatcacatcacaatcctagtagaattcacaaaacaaaaaagagtgttcattctcaacaaattctcatctcatcattatgactaacatg |
29769938 |
T |
|
| Q |
116 |
agagtagttctcatcactctccccatggtgtttgtcaccatcataagcttggttgttacaatgagagttcaagctgcatctcgtgctttctttgtttttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769937 |
agagtagttctcatcactctccccatggtgtttgtcaccatcataagcttggttgttacaatgagagttcaagctgcatctcgtgctttctttgtttttg |
29769838 |
T |
|
| Q |
216 |
gtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtcccac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769837 |
gtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtcccac |
29769738 |
T |
|
| Q |
316 |
cggtcgcttctccaatggtgtcaacctccctgaccttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769737 |
cggtcgcttctccaatggtgtcaacctccctgaccttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
29769650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 48100337 - 48100437
Alignment:
| Q |
200 |
gctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatc |
299 |
Q |
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| T |
48100337 |
gctttctttgtatttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattatc |
48100436 |
T |
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| Q |
300 |
c |
300 |
Q |
| |
|
| |
|
|
| T |
48100437 |
c |
48100437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 48074379 - 48074528
Alignment:
| Q |
206 |
tttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtc |
305 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| || || |||||| || ||||| || ||| ||||||||||| |||||||| || |
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| T |
48074379 |
tttgtttttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactc |
48074478 |
T |
|
| Q |
306 |
atcgtcccaccggtcgcttctccaatggtgtcaacctccctgaccttatc |
355 |
Q |
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| ||| |||| || |||||||||||||| ||||| | |||||||||||| |
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| T |
48074479 |
accgtgccactggacgcttctccaatggcctcaacatgcctgaccttatc |
48074528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 1807235 - 1807335
Alignment:
| Q |
200 |
gctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatc |
299 |
Q |
| |
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||||| ||||| ||||| || ||||||||||| | ||| || || ||||||||||| || || || ||||| || |||||||||||||| || ||||||| |
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| T |
1807235 |
gctttttttgtatttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattatc |
1807334 |
T |
|
| Q |
300 |
c |
300 |
Q |
| |
|
| |
|
|
| T |
1807335 |
c |
1807335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 48091426 - 48091529
Alignment:
| Q |
197 |
cgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgatt |
296 |
Q |
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|||||||||||||| |||||||| || |||||||| | ||| ||||||||||| || ||| || || || || || |||||||||||||||| |||| |
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| T |
48091426 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
48091525 |
T |
|
| Q |
297 |
atcc |
300 |
Q |
| |
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|||| |
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|
| T |
48091526 |
atcc |
48091529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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