View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_13 (Length: 387)
Name: NF1634_low_13
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 42903079 - 42903465
Alignment:
| Q |
10 |
catcatcattcttttagcttgacatgaagaggaatctgtat----taattgtaacagaaattagcatgatgaagatgatgattgcatatatatatccttt |
105 |
Q |
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| T |
42903079 |
catcatcattcttttagcttgacatgaagaggaatctgtatatattaattgtaacagaaattagcatgatgaagatgatgattgcatat--atatccttt |
42903176 |
T |
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| Q |
106 |
tgtcaatttcatgatatctttgtcggagataggaaaggtgtagagacagctaacaacgtaggaaagggagatgagactagttagttagctaggtagagtt |
205 |
Q |
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| T |
42903177 |
tgtcaatttcatgatatctttgtcggagataggaaaggtgtagagacagctaacaacgtaggaaagggagatgagactagttagttagctaggtagagtt |
42903276 |
T |
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| Q |
206 |
ggc----------ataagtgctcttcccccatggcctctaactttctgattagctaggtattttgcttttcacttctttctttatgtcaaga-------- |
287 |
Q |
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||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903277 |
ggcatatatatatataagtgctctt-ccccatggcctctaactttctaattagctaggtattttgcttttcacttctttctttatgtcaagacaagacaa |
42903375 |
T |
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| Q |
288 |
--caagaggctcaattaattatattcagtcgtgattttataacttttccatctttatataattttatac-aaaaattacatataagtgga |
374 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42903376 |
ggcaagaagctcaattaattatattcagtcgtgattttataacttttccatctttatataattttatacaaaaaattacatataagtgga |
42903465 |
T |
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