View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_19 (Length: 338)
Name: NF1634_low_19
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 322
Target Start/End: Original strand, 39896841 - 39897156
Alignment:
| Q |
7 |
tccaagaatatatcatatatacattcataaaaaggaaagggtgttacaatcataaaaccaagaagaaaactttttgaggcggtgacttaatttgaatatg |
106 |
Q |
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| T |
39896841 |
tccaaaaatatatcatatatacattcataaaaaggaaagggtgttacaatcgtaaaaccaagaagaaaactttttgaggcggtgacttaatttgaatatg |
39896940 |
T |
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| Q |
107 |
agttttcaggaaagaacattcaaagtagaaaatgtgttttctagaataaatgtgtttatcaaattaagtgtgttttgtagaaaacttcttctccttgtac |
206 |
Q |
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| T |
39896941 |
agttttcaggaaagaacattcaaagtagaaaatgtgttttctagaataaatgtgtttatcaaattaagtgtgttttgtagaaaacttcttctccttgtac |
39897040 |
T |
|
| Q |
207 |
agaattactggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaag |
306 |
Q |
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| T |
39897041 |
agaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaag |
39897140 |
T |
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| Q |
307 |
tctatgctgaataatt |
322 |
Q |
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| T |
39897141 |
tctatgctgaataatt |
39897156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 39856482 - 39856576
Alignment:
| Q |
222 |
taaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctga |
316 |
Q |
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| T |
39856482 |
taaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatttctttcaagtctttgctga |
39856576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 39737614 - 39737513
Alignment:
| Q |
222 |
taaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctgaataat |
321 |
Q |
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| T |
39737614 |
taaggaaagagtaatcccttccgataaaactctgtcaattgccgcaatgacatcctcatctaccatagcatcaaattcttcagagtctatgctgactaat |
39737515 |
T |
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| Q |
322 |
tt |
323 |
Q |
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|| |
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| T |
39737514 |
tt |
39737513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 38980450 - 38980373
Alignment:
| Q |
232 |
gtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtct |
309 |
Q |
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| T |
38980450 |
gtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagcatcaacttctttcaagtct |
38980373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 39863698 - 39863778
Alignment:
| Q |
236 |
tcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctga |
316 |
Q |
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| T |
39863698 |
tcccttcggataaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatctttcaagtctaggctga |
39863778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 39846749 - 39846807
Alignment:
| Q |
237 |
cccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaa |
295 |
Q |
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||||||||||| |||| ||||||||||| |||| |||||| |||||| |||| |||||| |
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| T |
39846749 |
cccttctgatataactttgtcgattgcaccaataacatccacatctaccatatcatcaa |
39846807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 32826964 - 32827058
Alignment:
| Q |
222 |
taaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctga |
316 |
Q |
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| T |
32826964 |
taagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatcatagcatcaatttcttcaaagtctttgctga |
32827058 |
T |
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