View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_21 (Length: 315)
Name: NF1634_low_21
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 90 - 311
Target Start/End: Original strand, 47776608 - 47776835
Alignment:
| Q |
90 |
cgcataatcaaaacaccttaaaaaccaacccaaatcacacactttcacttctgatct-------caactttacacatgatgactttccaccgcgtaacaa |
182 |
Q |
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| T |
47776608 |
cgcataatcaaaacaccctaaaaaccaacccaaatcacacactttcacttctgatctcaaatctcaactttacacacgatgactttccaccgcgtaacaa |
47776707 |
T |
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| Q |
183 |
aactcttctcatcaatcgtctccaaccaccgtcacaacttctcatcaacacccatccccaacggtgttcatcgacaaaagcacacacgtaagactagcga |
282 |
Q |
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| T |
47776708 |
aactcttctcatcaatcgtctccaaccaccgccacaacttctcatcaacaccc-tccccaacggtgttcatcgacaaaagcacacacgtaagactagcga |
47776806 |
T |
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| Q |
283 |
cttgttggttcagtcgaccataccgcctc |
311 |
Q |
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| T |
47776807 |
cttgttggttcagtcgaccatacctcctc |
47776835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 267
Target Start/End: Complemental strand, 29220944 - 29220768
Alignment:
| Q |
95 |
aatcaaaacaccttaaaaaccaacccaaatcacacactttcacttctgatctcaa-------ctttacacatgatgactttccaccgcgtaacaaaactc |
187 |
Q |
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|||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
29220944 |
aatcaaaacaccctaaaaacaaacccaaatcacac--tttcacttctgatctcaaatctcaccttcacacacgatgactttccaccgcgtaacaaaactg |
29220847 |
T |
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| Q |
188 |
ttctcatcaatcgtctccaaccaccgtcacaacttctcatcaacacccatccccaacggtgttcatcgacaaaagcacac |
267 |
Q |
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| T |
29220846 |
ttctcatcaatcgcctccaacaaccgccgcaacttctcatcaac-cccctctccggcggtgttcgtcgacaaaagcacac |
29220768 |
T |
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