View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_23 (Length: 305)
Name: NF1634_low_23
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 2586421 - 2586686
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2586421 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2586520 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2586521 |
catcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2586620 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtcaatatgctataaaccaaatatga |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2586621 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtaaatatgctataaaccaaatatga |
2586686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 2620111 - 2620351
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2620111 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2620210 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
2620211 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2620310 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtgttgattgcttttg |
250 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620311 |
ccacaaggatatgatactcaggttagtgttgattgcttttg |
2620351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 2432836 - 2433079
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432836 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2432935 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2432936 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttg |
2433035 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtca |
253 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
2433036 |
ccacaaggatatgatactcaggttagtgttaattacttttgtca |
2433079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 2677473 - 2677230
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2677473 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2677374 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
2677373 |
cattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2677274 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
2677273 |
ccacaaggatatgatactcaggttagtgttaattacttttgtca |
2677230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2572637 - 2572410
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2572637 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2572538 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
2572537 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2572438 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2572437 |
ccacaaggatatgatactcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 2448703 - 2448930
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2448703 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2448802 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
2448803 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2448902 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2448903 |
ccacaaggatatgatactcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 2600215 - 2599989
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2600215 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2600116 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
2600115 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttg |
2600016 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagt |
236 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
2600015 |
ccacaagtatatgatactcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2645035 - 2644808
Alignment:
| Q |
10 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
109 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645035 |
agattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2644936 |
T |
|
| Q |
110 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
2644935 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttg |
2644836 |
T |
|
| Q |
210 |
ccacaaggatatgatactcaggttagtg |
237 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
2644835 |
ccacaaggatatgatacgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 2677191 - 2677123
Alignment:
| Q |
217 |
gatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagtaatta |
282 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2677191 |
gatatgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaatta |
2677123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 2433123 - 2433189
Alignment:
| Q |
215 |
aggatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagta |
278 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
2433123 |
aggatttgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagta |
2433189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 17872804 - 17872673
Alignment:
| Q |
17 |
tcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaag |
116 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| |
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|
| T |
17872804 |
tcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaa |
17872705 |
T |
|
| Q |
117 |
gagaatatactttttggaagagaggatgctac |
148 |
Q |
| |
|
||||||||| ||||||| | ||| |||||||| |
|
|
| T |
17872704 |
gagaatataatttttggtaaagaagatgctac |
17872673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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