View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_24 (Length: 291)
Name: NF1634_low_24
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 55402661 - 55402389
Alignment:
| Q |
13 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgaga-------------atgttgtgagtataaatctca |
99 |
Q |
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| T |
55402661 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgagactaatgaatgataatgttgtgagtataaatctca |
55402562 |
T |
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| Q |
100 |
aagggaatgccaatccaaaaacactaatctatttttgtgtgactaacgaataaaaagaagnnnnnnngactaatattaactgtgagattcactgcaaaac |
199 |
Q |
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| T |
55402561 |
aagggaatgccaatccaaaaagactaatctatttttgtttgactaacgaataaaaagaagaaaaaaagactaatattaactgtgagattcactgcaaaac |
55402462 |
T |
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| Q |
200 |
ttattaataatcttgttaaacnnnnnnnggactcgtaatattgcactaccgttcatgagccgatgtcttcaac |
272 |
Q |
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| T |
55402461 |
ttattaataatcttgttaaacaaaaaaaggactcgtaatattgcactaccgttcatgagccgatgtcttcaac |
55402389 |
T |
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