View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_25 (Length: 277)
Name: NF1634_low_25
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_25 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 18342826 - 18342984
Alignment:
| Q |
104 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342826 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
18342925 |
T |
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| Q |
204 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342926 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 48288822 - 48288862
Alignment:
| Q |
161 |
atcacttcagatctttctaaagatgaatttggtactgcttt |
201 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288822 |
atcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 36840599 - 36840757
Alignment:
| Q |
104 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840599 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
36840698 |
T |
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| Q |
204 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840699 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 164538 - 164380
Alignment:
| Q |
104 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
164538 |
attattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttt |
164439 |
T |
|
| Q |
204 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
262 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
164438 |
tgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 14249188 - 14249346
Alignment:
| Q |
104 |
attattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
14249188 |
attattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttt |
14249287 |
T |
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| Q |
204 |
tgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
262 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14249288 |
tgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
155 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
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| Q |
255 |
ctcctatg |
262 |
Q |
| |
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|||||||| |
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|
| T |
46699227 |
ctcctatg |
46699234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 873 - 733
Alignment:
| Q |
122 |
cgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaa |
221 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || |
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| T |
873 |
cgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataa |
774 |
T |
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| Q |
222 |
tgtcaccaatataagcataccgtcgattactagctcctatg |
262 |
Q |
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||||||||||| |||||| || |||||||||||||||||| |
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| T |
773 |
cgtcaccaatatgagcatatcggcgattactagctcctatg |
733 |
T |
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