View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_27 (Length: 275)
Name: NF1634_low_27
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 40632372 - 40632122
Alignment:
| Q |
10 |
attattctcatcatgaagaaaagtgaatgagttatgcagaaccaaggtaggatcttgagatagatcttgtatgattgttgttccagcctcatcatccttg |
109 |
Q |
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| T |
40632372 |
attattctcatcatgaagaaaagtgaatgagttatgcagaaccaaggtaggatcttgagatagatcttgtatgatttttgttccagcctcatcatccttg |
40632273 |
T |
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| Q |
110 |
gctccttcctgctccaagttcactatcacaatatcagtttccagcctctcaacatttgaatcatttttgtgagttgtatcaatttcaagctgcgcatttt |
209 |
Q |
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| T |
40632272 |
gctccttcctgctccaagttcactatcacattatcagtttccagcctctcaacatttgaatcatttttgtgagttgtatcaatttcaagctgcgcatttt |
40632173 |
T |
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| Q |
210 |
gaggtgttttagtggggtaaaattgcttgtcggtcaagttatttctaatgt |
260 |
Q |
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| T |
40632172 |
gaggtgttttagtggggtaaaattgcttgtcggtcaagttatttctaatgt |
40632122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 50904245 - 50904277
Alignment:
| Q |
73 |
atcttgtatgattgttgttccagcctcatcatc |
105 |
Q |
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| T |
50904245 |
atcttgtatgattgttgttacagcctcatcatc |
50904277 |
T |
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