View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_29 (Length: 259)

Name: NF1634_low_29
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_29
NF1634_low_29
[»] chr1 (3 HSPs)
chr1 (134-259)||(1829549-1829674)
chr1 (65-159)||(1814212-1814306)
chr1 (58-119)||(1829461-1829526)
[»] scaffold0571 (1 HSPs)
scaffold0571 (1-36)||(7692-7727)
[»] chr5 (1 HSPs)
chr5 (1-40)||(11596477-11596516)
[»] chr4 (4 HSPs)
chr4 (1-40)||(5654613-5654652)
chr4 (1-32)||(34589728-34589759)
chr4 (1-35)||(43188615-43188649)
chr4 (1-33)||(10546153-10546185)
[»] chr3 (3 HSPs)
chr3 (1-35)||(13807172-13807206)
chr3 (1-31)||(40017391-40017421)
chr3 (3-35)||(20691322-20691354)
[»] scaffold0598 (1 HSPs)
scaffold0598 (3-40)||(8077-8114)
[»] chr7 (1 HSPs)
chr7 (1-33)||(44172912-44172944)
[»] chr6 (1 HSPs)
chr6 (1-33)||(2140503-2140535)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 1829549 - 1829674
Alignment:
Q  134 tgctttgatatgctcaaatatatgcttttcaaccatgtgttgtccagatttacacagatttattagatagactaatgatactgaggaagcatagtatcta 233  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1829549 tgctttgatatggtcaaatatatgcttttcgaccatgtgttgtccaggtttacacagattaattagatagactaatgatactgaggaagcatagtatcta 1829648  T
Q  234 atttttggaagatatcgttactcttt 259  Q
    ||||||||||||||||| ||||||||    
T  1829649 atttttggaagatatcgctactcttt 1829674  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 1814212 - 1814306
Alignment:
Q  65 tgtttgtgtatgtgcttcataggtgacttgtggttggttgttatcttttttataaactccnnnnnnnngtgctttgatatgctcaaatatatgct 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||  ||||||||    
T  1814212 tgtttgtgtatgcgcttcataggtgacttgtggttggttgttatcttttttataaactccttttttttgtgctttgatatgctcacttatatgct 1814306  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 1829461 - 1829526
Alignment:
Q  58 tgtgtcgtgtttgtgtatgtgcttcata----ggtgacttgtggttggttgttatcttttttataa 119  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||    
T  1829461 tgtgtcgtgtttgtgtatgtgcttcatatataggtgacttgtggttggttgttatctttgttataa 1829526  T

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Target: scaffold0571 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7727 - 7692
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatcagta 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  7727 attgaattatgtcattttctcaaattattatcagta 7692  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11596477 - 11596516
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatcagtatcga 40  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  11596477 attgaattatgtcattttctcaaattattatcggtatcga 11596516  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5654613 - 5654652
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatcagtatcga 40  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  5654613 attgaattatgtcattttctcaaattattatcagtgtcga 5654652  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34589728 - 34589759
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatc 32  Q
    ||||||||||||||||||||||||||||||||    
T  34589728 attgaattatgtcattttctcaaattgttatc 34589759  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43188649 - 43188615
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatcagt 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  43188649 attgaattatgtcattttctcaaattattatcagt 43188615  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10546185 - 10546153
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatca 33  Q
    |||||||||||||||||||||||||| ||||||    
T  10546185 attgaattatgtcattttctcaaattattatca 10546153  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13807206 - 13807172
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatcagt 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagt 13807172  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40017391 - 40017421
Alignment:
Q  1 attgaattatgtcattttctcaaattgttat 31  Q
    |||||||||||||||||||||||||||||||    
T  40017391 attgaattatgtcattttctcaaattgttat 40017421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 20691354 - 20691322
Alignment:
Q  3 tgaattatgtcattttctcaaattgttatcagt 35  Q
    |||||||||||||||||||||||| ||||||||    
T  20691354 tgaattatgtcattttctcaaattattatcagt 20691322  T

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Target: scaffold0598 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 8077 - 8114
Alignment:
Q  3 tgaattatgtcattttctcaaattgttatcagtatcga 40  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  8077 tgaattatgtcattttctcaaattattatccgtatcga 8114  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44172912 - 44172944
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatca 33  Q
    |||||||||||||||||||||||||| ||||||    
T  44172912 attgaattatgtcattttctcaaattattatca 44172944  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2140503 - 2140535
Alignment:
Q  1 attgaattatgtcattttctcaaattgttatca 33  Q
    |||||||||||||||||||||||||| ||||||    
T  2140503 attgaattatgtcattttctcaaattattatca 2140535  T

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