View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_3 (Length: 738)

Name: NF1634_low_3
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_3
NF1634_low_3
[»] chr2 (1 HSPs)
chr2 (98-727)||(15186677-15187306)


Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 98 - 727
Target Start/End: Original strand, 15186677 - 15187306
Alignment:
Q  98 tataatgatttagtttaggtatttgataaatgattttaaacgatgagaaattgttatccaaaccaattgagatcgggtttatctggtttggtttaaattt 197  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||| ||||||||||||  |    
T  15186677 tataataatttagtttaggtattagataaatgattttaaacgatgagaaatctatatccaaaccaattgagatcgggttaatctagtttggtttaaacat 15186776  T
Q  198 gaaaattagaagaagaaaaactaaatcaatgcaatcaaattgtataaaaatttagagtatatcagatagtaattagtttgattttgatgtccctaatcat 297  Q
    |||||   |||||| |||||| ||| ||||  ||||||||||||| ||||||| ||||| ||||||||   |||||||||||||||||||||||||||||    
T  15186777 gaaaacgggaagaa-aaaaaccaaaccaatttaatcaaattgtattaaaatttcgagtagatcagata---attagtttgattttgatgtccctaatcat 15186872  T
Q  298 aatccacaaccatgagttgggtgataacgacatcattgttgaggcacaaacatatagatgaattata--gctataagcataattctttataaatgcatat 395  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  15186873 aatccacaagcatgagttgggtgataacgacatcattgttgaggcacaaacatatagatgaattatatagctataagcataattctttataaatgcatat 15186972  T
Q  396 tctcttccgacatatccaagtgtgtgataaagccacgtttgtcccatcactattatctgatcaggattgtgtgccttttatcagctcaaacaacaacnnn 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  15186973 tctcttccgacatatccaagtgtgtgataaagccacgtttgtcccatcactattatctgatcaggattgtgtgccttttatcagctcaaacaacaacaac 15187072  T
Q  496 nnnnnccactatttatatataacaggattgggttcaataaatagaatcatcataatatgccccactatttgaatgtcttcannnnnnncaaacaaagaca 595  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  15187073 aaaaaccactatttatatataacaggattgggttcaataaatagaatcatcataatatgccccactatttgaatgtcttcatttctttcaaacaaagaca 15187172  T
Q  596 aaacaaaacgttcaatcaaaatggtgacctgtaataaatgaggatgtagaagg--atattagctaaatcacaacacttgacaaaagtaaattgacctaat 693  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||    
T  15187173 aaacaaaacgttcaatcaaaatggtgacctgtaataaatgaggatgtagaaggatatattagctaaaacacaacacttgacaaaagtaaattggcctaat 15187272  T
Q  694 tggtacggaatgaactcatatctgacacaggttc 727  Q
    ||||| |||||||||||||||| |||||||||||    
T  15187273 tggtaaggaatgaactcatatccgacacaggttc 15187306  T

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