View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_31 (Length: 248)
Name: NF1634_low_31
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38249591 - 38249826
Alignment:
| Q |
1 |
tgagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249591 |
tgagtcaggttcatggcaaaaagtattgaaagtgagagtaagagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggt |
38249690 |
T |
|
| Q |
101 |
gatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249691 |
gatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtt |
38249790 |
T |
|
| Q |
201 |
tttaccctcgctttatctcctactcagatactcttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38249791 |
tttaccctcgctttatctcctactcagatactcttc |
38249826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38254708 - 38254803
Alignment:
| Q |
1 |
tgagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaa |
96 |
Q |
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|||||||||||| ||| |||| |||| ||||||||| ||| |||||||||||||||| |||| | |||| ||||||||| ||||||||||||||| |
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| T |
38254708 |
tgagtcaggttcgtggaaaaaggtattgaaagtgagggtaagagcattgggattgaatgagacaaatcccaatgttagaaagtttatggttatgaa |
38254803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 20655883 - 20655704
Alignment:
| Q |
1 |
tgagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggt |
100 |
Q |
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||||||||||| ||| |||| |||| |||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
20655883 |
tgagtcaggtttgtggaaaaaggtattaaaagtgagagtaagagcattgggattgaatgagacaaatcctaatgttagagggtttatggttatgaatggt |
20655784 |
T |
|
| Q |
101 |
gatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaat |
180 |
Q |
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|||| ||| ||||| |||| |||| || ||||| ||| |||||||| ||||| | ||||||||||| || ||||| |
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| T |
20655783 |
aatctattagtttttcctacgaaagagaaactttacggttatggtttggagggtgaaagttatatgatggtcgaagaaat |
20655704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 20657236 - 20657354
Alignment:
| Q |
1 |
tgagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggt |
100 |
Q |
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|||||||||||| ||| |||| |||| || |||||| ||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| ||| |
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| T |
20657236 |
tgagtcaggttcgtggaaaaaggtattgacagtgagggtaagagcattgagattgaatgagacaaatcctaatgttagagggtttatgtttatgaatggt |
20657335 |
T |
|
| Q |
101 |
gatcttttaatttttgcta |
119 |
Q |
| |
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|||| ||| ||||||||| |
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| T |
20657336 |
aatctcttagtttttgcta |
20657354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 12035815 - 12035623
Alignment:
| Q |
3 |
agtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgtta------gagggtttatggttatgaa |
96 |
Q |
| |
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|||||||||| ||| |||| |||| |||||||| ||| |||||||||||||||| |||| | |||||||||||| ||||||||||||||||||| |
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| T |
12035815 |
agtcaggttcgtggaaaaaggtattaaaagtgagggtaagagcattgggattgaatgagacaaatcctaatgttaatgttagagggtttatggttatgaa |
12035716 |
T |
|
| Q |
97 |
cggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaaca |
189 |
Q |
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|| |||| || |||||||||| ||||| || ||||||| | |||||||| ||||| | ||||||||||| || ||||| || ||||| |
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| T |
12035715 |
tcgtaatctcttcgtttttgctacggaagagaaactttacagctatggtttggagggtgaaagttatatgatggtcgaagaaatgtgtcaaca |
12035623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 12037137 - 12037251
Alignment:
| Q |
66 |
atcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatat |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||| |||| || ||||||||| |||||| | ||||| | ||||| |
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| T |
12037137 |
atcctcatgttagagggtttatggttatgaatggtaatctattagtttttgctatgaaagagaaactttacagttatggtttgaagggtgaaagttatat |
12037236 |
T |
|
| Q |
166 |
gatggtggaggaaat |
180 |
Q |
| |
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|||||| || ||||| |
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| T |
12037237 |
gatggtcgaagaaat |
12037251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12036919 - 12036980
Alignment:
| Q |
1 |
tgagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggaga |
62 |
Q |
| |
|
|||||||||||| ||| |||| |||| ||||||||| || |||||||||||||||| |||| |
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|
| T |
12036919 |
tgagtcaggttcgtggaaaaaggtattgaaagtgaggttaagagcattgggattgaatgaga |
12036980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 22177656 - 22177834
Alignment:
| Q |
2 |
gagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtg |
101 |
Q |
| |
|
||||||||||| || |||| |||| ||||||||| ||| |||||||| ||||||| |||| | |||| ||||||||||||||||| |||||||| ||| |
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| T |
22177656 |
gagtcaggttcgtgcaaaaaggtattgaaagtgagggtaagagcattgagattgaatgagacaaatcccaatgttagagggtttattgttatgaatggta |
22177755 |
T |
|
| Q |
102 |
atcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaat |
180 |
Q |
| |
|
|||| ||| | |||||||| ||||| || |||| |||| |||||||| ||||| | ||||||||||| || ||||| |
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| T |
22177756 |
atctcttagtctttgctacggaagagaaactttatagttatggtttggagggtgaaagttatatgatggtcgaagaaat |
22177834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 22169381 - 22169499
Alignment:
| Q |
2 |
gagtcaggttcatggcaaaaagtatcgaaagtgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtg |
101 |
Q |
| |
|
||||||||||| ||| |||| |||| ||||||||| ||| |||||||| |||||| |||| | |||| |||||||||||||||||||||||||| ||| |
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| T |
22169381 |
gagtcaggttcgtggaaaaaggtattgaaagtgagggtaagagcattgaaattgaatgagacaaatcccaatgttagagggtttatggttatgaatggta |
22169480 |
T |
|
| Q |
102 |
atcttttaatttttgctac |
120 |
Q |
| |
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|||| ||| | |||||||| |
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| T |
22169481 |
atctcttagtctttgctac |
22169499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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