View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_38 (Length: 204)

Name: NF1634_low_38
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_38
NF1634_low_38
[»] chr2 (5 HSPs)
chr2 (129-200)||(27149451-27149522)
chr2 (121-204)||(27149017-27149100)
chr2 (121-196)||(15904048-15904126)
chr2 (121-204)||(2869847-2869932)
chr2 (121-173)||(16388310-16388362)
[»] chr7 (3 HSPs)
chr7 (121-177)||(28617406-28617462)
chr7 (121-204)||(3047114-3047200)
chr7 (121-169)||(2580251-2580299)
[»] chr4 (1 HSPs)
chr4 (121-204)||(5112103-5112186)
[»] scaffold0078 (2 HSPs)
scaffold0078 (121-204)||(23393-23473)
scaffold0078 (121-204)||(43120-43209)
[»] scaffold0184 (1 HSPs)
scaffold0184 (121-204)||(29635-29724)
[»] chr5 (6 HSPs)
chr5 (118-204)||(7161054-7161139)
chr5 (121-174)||(2630087-2630140)
chr5 (131-172)||(28537492-28537533)
chr5 (131-172)||(30899730-30899771)
chr5 (118-169)||(34842464-34842514)
chr5 (125-173)||(5611009-5611057)
[»] chr1 (4 HSPs)
chr1 (121-163)||(32737187-32737229)
chr1 (121-169)||(17345704-17345753)
chr1 (118-169)||(50521288-50521340)
chr1 (118-174)||(3281568-3281624)
[»] chr8 (2 HSPs)
chr8 (120-173)||(28307423-28307476)
chr8 (121-169)||(5990745-5990793)
[»] chr6 (5 HSPs)
chr6 (118-169)||(1115287-1115338)
chr6 (121-160)||(31077151-31077190)
chr6 (118-163)||(99020-99065)
chr6 (121-169)||(21355901-21355949)
chr6 (121-169)||(33721743-33721791)
[»] chr3 (3 HSPs)
chr3 (121-174)||(4387102-4387155)
chr3 (125-173)||(21156296-21156344)
chr3 (121-169)||(29100033-29100081)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 27149522 - 27149451
Alignment:
Q  129 tggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatagttctaaatctatgtgtaaagcaa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27149522 tggtaatcaatgagtaaagtagcctcaagtaacaataacaacaaaatagttctaaatctatgtgtaaagcaa 27149451  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 27149100 - 27149017
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    |||| ||||| |||||||||||||||||||| ||||||||||| ||||| || |||| ||||||||||| ||||||||||||||    
T  27149100 aaagaaagtgataatcaatgagtaaagtagcatcaagcaacaacaacaataacatagatctaaatctatttgtaaagcaacacc 27149017  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 15904126 - 15904048
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaaca---aaatagttctaaatctatgtgtaaa 196  Q
    ||||| |||||||||||||||| |||||| ||||||||||||| |||||||   ||| ||||||||| |||||||||||    
T  15904126 aaagggagtggtaatcaatgagcaaagtatcctcaagcaacaacaacaacaacgaaacagttctaaaactatgtgtaaa 15904048  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 2869932 - 2869847
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaaca--aaatagttctaaatctatgtgtaaagcaacacc 204  Q
    ||||||||| || |||||||||||||||||| |||| |||||| |||||||  ||||||  ||||||||| ||||| |||||||||    
T  2869932 aaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacacc 2869847  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 16388310 - 16388362
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaa 173  Q
    |||| |||| ||||||||||| |||||||| |||||||| ||| |||||||||    
T  16388310 aaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaa 16388362  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 28617462 - 28617406
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatag 177  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  28617462 aaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaatag 28617406  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 3047114 - 3047200
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa---caaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    |||| ||||| |||||||||||||||||  ||||||||||||| |||||   ||||||||||||||| || ||||||||||||||||    
T  3047114 aaagaaagtgataatcaatgagtaaagtgtcctcaagcaacaacaacaataacaaaatagttctaaaactgtgtgtaaagcaacacc 3047200  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 2580251 - 2580299
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    |||||||||||||||||||| |||||||  | ||||||||||| |||||    
T  2580251 aaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa 2580299  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 5112103 - 5112186
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    ||||| ||||||||||||||||||||  || |||||||||||| |||||||||| |||| |||| || ||||||||||||||||    
T  5112103 aaagggagtggtaatcaatgagtaaacaagtctcaagcaacaacaacaacaaaacagttttaaaactttgtgtaaagcaacacc 5112186  T

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Target: scaffold0078 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 23393 - 23473
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    |||||||||||||||||||||||||| || |||||||   |||||||||||||| |||| |||| ||| |||||||||||||||    
T  23393 aaaggaagtggtaatcaatgagtaaaatatcctcaag---caataacaacaaaacagttataaaactaagtgtaaagcaacacc 23473  T

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Target: scaffold0078; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 43120 - 43209
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctca------agcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    ||||||||||||||||||||||||||||| |||||      | |||||| |||||||||| ||||| ||| |||||||||||||||||||    
T  43120 aaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaacaaaacagttcaaaaactatgtgtaaagcaacacc 43209  T

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Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 29724 - 29635
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctca------agcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    ||||||||||||||||||||||||||||| |||||      | |||||| |||||||||| ||||| ||| |||||||||||||||||||    
T  29724 aaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaacaaaacagttcaaaaactatgtgtaaagcaacacc 29635  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 7161139 - 7161054
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaatagttctaaatctatgtgtaaagcaacacc 204  Q
    |||||||| |||||||| |||||||||| ||| | ||||||||||| || || |||| |||| |||| |||||||||||||||||||    
T  7161139 agtaaagggagtggtaagcaatgagtaaggtatcttcaagcaacaa-aaaaaaaaaaaagttttaaaactatgtgtaaagcaacacc 7161054  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 2630087 - 2630140
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaa 174  Q
    ||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaacaacaaaa 2630140  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 28537492 - 28537533
Alignment:
Q  131 gtaatcaatgagtaaagtagcctcaagcaacaataacaacaa 172  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  28537492 gtaatcaatgagtaaagtagtctcaagcaacaacaacaacaa 28537533  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 30899730 - 30899771
Alignment:
Q  131 gtaatcaatgagtaaagtagcctcaagcaacaataacaacaa 172  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  30899730 gtaatcaatgagcaaagtagcctcaagcaacaacaacaacaa 30899771  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 34842464 - 34842514
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||| |||||    
T  34842464 agtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaa 34842514  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 5611009 - 5611057
Alignment:
Q  125 gaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaa 173  Q
    ||||| |||||||||||||||||||| || ||||||||| || ||||||    
T  5611009 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaa 5611057  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 32737229 - 32737187
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaa 163  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  32737229 aaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaa 32737187  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 17345753 - 17345704
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaa-gtagcctcaagcaacaataacaa 169  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  17345753 aaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaacaa 17345704  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 50521340 - 50521288
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagt-aaagtagcctcaagcaacaataacaa 169  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||| |||||    
T  50521340 agtaaaggaagtggtaatcaatgagtaaaagtagtctcaaacaacaacaacaa 50521288  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 3281568 - 3281624
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaa 174  Q
    ||||||||||||||||||||||| |||||||  |  |||||||||| ||||| ||||    
T  3281568 agtaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaaaaaaa 3281624  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 28307423 - 28307476
Alignment:
Q  120 taaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaa 173  Q
    |||||||||| ||||||||||||| ||||||||||||| ||| | |||||||||    
T  28307423 taaaggaagtagtaatcaatgagtcaagtagcctcaagtaacgacaacaacaaa 28307476  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 5990793 - 5990745
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    ||||||||| ||||||||||  ||||||||| ||||||||||| |||||    
T  5990793 aaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaacaa 5990745  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 1115338 - 1115287
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    |||||| ||||| |||||||||||| |||||||| ||||||||||| |||||    
T  1115338 agtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaacaacaa 1115287  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 31077190 - 31077151
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaa 160  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  31077190 aaaggaaatagtaatcaatgagtaaagtagcctcaagcaa 31077151  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 99020 - 99065
Alignment:
Q  118 agtaaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaa 163  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||    
T  99020 agtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaa 99065  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 21355901 - 21355949
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    |||||||||||||||||||| |||||||  | ||||||||||| |||||    
T  21355901 aaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa 21355949  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 33721791 - 33721743
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    ||||||||| |||||| |||||||||||||  ||||||||||| |||||    
T  33721791 aaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaacaacaa 33721743  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 4387155 - 4387102
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaaa 174  Q
    |||| |||| ||||||||||||||||||||||  ||||||||| ||||| ||||    
T  4387155 aaagaaagtagtaatcaatgagtaaagtagccataagcaacaacaacaaaaaaa 4387102  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 21156296 - 21156344
Alignment:
Q  125 gaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaacaaa 173  Q
    ||||| |||||||||||||||||||| || ||||||||| || ||||||    
T  21156296 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaa 21156344  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 29100033 - 29100081
Alignment:
Q  121 aaaggaagtggtaatcaatgagtaaagtagcctcaagcaacaataacaa 169  Q
    ||||||||| |||||||||||||| | ||| |||||||||||| |||||    
T  29100033 aaaggaagtagtaatcaatgagtagaatagtctcaagcaacaacaacaa 29100081  T

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