View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_39 (Length: 202)

Name: NF1634_low_39
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_39
NF1634_low_39
[»] chr2 (18 HSPs)
chr2 (1-202)||(27149075-27149276)
chr2 (17-76)||(21629762-21629822)
chr2 (24-76)||(10445678-10445732)
chr2 (17-77)||(20522030-20522092)
chr2 (133-179)||(2869605-2869651)
chr2 (133-179)||(28770687-28770733)
chr2 (26-76)||(35397325-35397375)
chr2 (18-69)||(40014746-40014799)
chr2 (24-76)||(8039870-8039924)
chr2 (17-76)||(16940434-16940496)
chr2 (17-76)||(17011099-17011161)
chr2 (77-127)||(27147014-27147064)
chr2 (17-77)||(33528846-33528908)
chr2 (133-179)||(15903803-15903849)
chr2 (17-76)||(17865014-17865075)
chr2 (23-60)||(27149532-27149569)
chr2 (133-200)||(31056162-31056227)
chr2 (133-177)||(35397650-35397694)
[»] chr7 (15 HSPs)
chr7 (1-76)||(3047063-3047139)
chr7 (1-77)||(28617437-28617513)
chr7 (17-77)||(9235782-9235844)
chr7 (17-77)||(46516536-46516598)
chr7 (24-76)||(2580199-2580252)
chr7 (14-76)||(23403235-23403299)
chr7 (17-69)||(4796895-4796949)
chr7 (24-80)||(9190240-9190298)
chr7 (18-76)||(5817501-5817559)
chr7 (14-76)||(20283900-20283964)
chr7 (23-77)||(29159612-29159668)
chr7 (17-76)||(49091472-49091534)
chr7 (133-202)||(3047370-3047438)
chr7 (27-76)||(2647962-2648013)
chr7 (17-74)||(33332675-33332734)
[»] chr1 (11 HSPs)
chr1 (131-202)||(22819544-22819615)
chr1 (17-76)||(775483-775544)
chr1 (133-179)||(32736909-32736955)
chr1 (132-181)||(11031386-11031435)
chr1 (24-76)||(13604856-13604909)
chr1 (1-76)||(17345728-17345805)
chr1 (133-202)||(17345432-17345501)
chr1 (133-173)||(9022817-9022857)
chr1 (17-77)||(29651619-29651682)
chr1 (1-76)||(50521312-50521389)
chr1 (133-202)||(35109450-35109519)
[»] chr3 (12 HSPs)
chr3 (17-76)||(18554502-18554563)
chr3 (18-76)||(4387249-4387307)
chr3 (17-76)||(3323778-3323839)
chr3 (17-76)||(6794927-6794988)
chr3 (23-76)||(37466102-37466157)
chr3 (17-64)||(1417704-1417753)
chr3 (23-78)||(2074881-2074938)
chr3 (133-166)||(25929299-25929332)
chr3 (24-76)||(27986667-27986720)
chr3 (1-57)||(4387130-4387186)
chr3 (133-200)||(25795899-25795964)
chr3 (23-76)||(48438025-48438080)
[»] chr5 (16 HSPs)
chr5 (17-77)||(19588556-19588618)
chr5 (17-76)||(42127634-42127695)
chr5 (19-76)||(10281673-10281732)
chr5 (17-76)||(42126632-42126693)
chr5 (133-202)||(7160817-7160885)
chr5 (23-76)||(33031178-33031231)
chr5 (24-76)||(36932582-36932635)
chr5 (24-77)||(3880112-3880167)
chr5 (20-87)||(6741654-6741722)
chr5 (134-202)||(33030854-33030922)
chr5 (133-176)||(2630372-2630415)
chr5 (17-76)||(11182059-11182120)
chr5 (17-76)||(28832071-28832132)
chr5 (133-202)||(6741967-6742036)
chr5 (133-166)||(11181745-11181778)
chr5 (24-74)||(17004192-17004244)
[»] chr8 (14 HSPs)
chr8 (18-76)||(7493294-7493352)
chr8 (14-76)||(9766042-9766106)
chr8 (18-76)||(5990785-5990843)
chr8 (23-76)||(6813489-6813543)
chr8 (133-167)||(31513245-31513279)
chr8 (24-76)||(28307368-28307421)
chr8 (17-76)||(23799803-23799863)
chr8 (133-180)||(5990474-5990521)
chr8 (24-76)||(6127029-6127083)
chr8 (133-179)||(9054750-9054796)
chr8 (24-83)||(26287706-26287767)
chr8 (24-83)||(26312957-26313018)
chr8 (24-74)||(26403463-26403515)
chr8 (134-202)||(3051235-3051303)
[»] chr6 (6 HSPs)
chr6 (17-76)||(5572821-5572882)
chr6 (18-78)||(27165513-27165573)
chr6 (17-77)||(31979323-31979385)
chr6 (17-76)||(31086687-31086749)
chr6 (133-177)||(1115017-1115061)
chr6 (28-69)||(21801584-21801627)
[»] chr4 (11 HSPs)
chr4 (17-76)||(25862247-25862308)
chr4 (17-78)||(54866991-54867054)
chr4 (23-77)||(34496054-34496109)
chr4 (133-175)||(5112379-5112421)
chr4 (17-76)||(10047190-10047251)
chr4 (18-69)||(1983525-1983577)
chr4 (1-76)||(5112052-5112128)
chr4 (133-177)||(34670578-34670622)
chr4 (24-76)||(24333621-24333675)
chr4 (17-83)||(5269419-5269488)
chr4 (1-60)||(16624218-16624279)
[»] scaffold0006 (1 HSPs)
scaffold0006 (24-76)||(133513-133566)
[»] scaffold0176 (1 HSPs)
scaffold0176 (17-76)||(17077-17138)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27149075 - 27149276
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatg 100  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149075 tttactcattgattatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatg 27149174  T
Q  101 gtgttgtgatagaaggtggcaaaattagtcttttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||| ||||||    
T  27149175 gtgttgtgatagaaggtggcaaaattagtcttttttctcttaggattcattgtgagtgtgggtgacttaaaaaacaggtagaagttaagtcttgttcttt 27149274  T
Q  201 gt 202  Q
    ||    
T  27149275 gt 27149276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21629822 - 21629762
Alignment:
Q  17 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  21629822 cacttcctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 10445678 - 10445732
Alignment:
Q  24 tttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||| ||||||    
T  10445678 tttgctccacacatctttgtttttcattggtgtgattttgtccgaattcacaaca 10445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 20522092 - 20522030
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| |||| |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  20522092 cacttccttttctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 20522030  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 2869605 - 2869651
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 179  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||    
T  2869605 ttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggt 2869651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 28770687 - 28770733
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 179  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  28770687 ttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggt 28770733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 35397375 - 35397325
Alignment:
Q  26 tgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||| ||||||    
T  35397375 tgctccgcacatctttgtttcattggtgtgtttttgtccgaattcacaaca 35397325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 40014799 - 40014746
Alignment:
Q  18 actttctttgctccacacatctttgtttg--attggtgtgattttgtccgaatt 69  Q
    |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  40014799 acttcctttgctccatacatctttgtttgtcattggtgtgattttgtccgaatt 40014746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 8039924 - 8039870
Alignment:
Q  24 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  8039924 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 8039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 16940434 - 16940496
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  16940434 cacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 17011099 - 17011161
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  17011099 cacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 27147014 - 27147064
Alignment:
Q  77 gatatatatgaaagacttcatat-ggtgttgtgatagaaggtggcaaaatta 127  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  27147014 gatatatatgaa-gacttcatattggtgttgtaatagaaggtggcaaaatta 27147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 33528846 - 33528908
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| |||||||||||||||||||||  || |||||||  |||||||||||||| |||||||    
T  33528846 cacttcctttgctccacacatctttgttattcattggtggaattttgtccgaattcacaacag 33528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 15903803 - 15903849
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 179  Q
    ||||||| |||||||||||| |||||||| |||||| ||||||||||    
T  15903803 ttttctcataggattcattgagagtgtgggtgacttgaaaaatgggt 15903849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 17865075 - 17865014
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||| |||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  17865075 cacttccttttctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 27149532 - 27149569
Alignment:
Q  23 ctttgctccacacatctttgtttgattggtgtgatttt 60  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  27149532 ctttgctacacacatctttgtttcattggtgtgatttt 27149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 31056227 - 31056162
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattcttt 200  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||| ||| ||| ||||| ||||||    
T  31056227 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttt 31056162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 35397694 - 35397650
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgg 177  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatgg 35397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3047139 - 3047063
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  3047139 tttactcattgattatcactttctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 3047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28617437 - 28617513
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaacag 77  Q
    |||||||| ||| || ||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  28617437 tttactcattgattaccacttcctttgctccacacatctttgtttgattaatgtgattttgtccgaattcacaacag 28617513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 9235782 - 9235844
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  9235782 cacttcctttgctccacacatctttgttatttattggtgtgattttgtccgaattcacaacag 9235844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 46516536 - 46516598
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  46516536 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 46516598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2580252 - 2580199
Alignment:
Q  24 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  2580252 tttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 2580199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 23403235 - 23403299
Alignment:
Q  14 tatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| |||||||||||||||||||||  || |||||| |||||||||||||||| ||||||    
T  23403235 tatcacttcctttgctccacacatctttgttattcattggtatgattttgtccgaattcacaaca 23403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 4796895 - 4796949
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaatt 69  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||||||||||    
T  4796895 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaatt 4796949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 9190240 - 9190298
Alignment:
Q  24 tttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaacagata 80  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||||| ||||||||||    
T  9190240 tttgctccacacatctttgtttttcattggtgtgattttgaccgaattcacaacagata 9190298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 5817501 - 5817559
Alignment:
Q  18 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||| ||||||| ||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  5817501 acttactttgcttcacacatctttgttttattgatgtgattttgtacgaattcacaaca 5817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 20283964 - 20283900
Alignment:
Q  14 tatcactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||  |||||||||||||||||||||  | || |||||||||||||||||||| ||||||    
T  20283964 tatcacttcttttgctccacacatctttgttattcataggtgtgattttgtccgaattcacaaca 20283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 29159668 - 29159612
Alignment:
Q  23 ctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  29159668 ctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 29159612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 49091534 - 49091472
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  49091534 cacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 49091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 3047438 - 3047370
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    |||| ||||| ||||||||| |||||||| ||||||| ||||||||| ||| ||| ||||| ||||||||    
T  3047438 ttttatcttaagattcattgagagtgtgggtgactta-aaaatgggtagaaattaggtcttgttctttgt 3047370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2647962 - 2648013
Alignment:
Q  27 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||| ||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 2648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 33332675 - 33332734
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaa 74  Q
    ||||| ||||| |||||||||||| |||  | ||||||||||||||||||||||| ||||    
T  33332675 cacttcctttggtccacacatcttggttattcattggtgtgattttgtccgaattcacaa 33332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 22819615 - 22819544
Alignment:
Q  131 ttttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||| | ||| ||| ||||||||||||||    
T  22819615 ttttttctcttaggattcattgagagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgt 22819544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 775544 - 775483
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  775544 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 32736909 - 32736955
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 179  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32736909 ttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggt 32736955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 11031386 - 11031435
Alignment:
Q  132 tttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtgg 181  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  11031386 tttttctcttaggatacattgtgagtgtgaatgacttgaaaaatgggtgg 11031435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 13604856 - 13604909
Alignment:
Q  24 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  13604856 tttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17345728 - 17345805
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgatt--ttgtccgaattaacaaca 76  Q
    |||||||| ||| ||  |||| ||||||||||||||||||||||| ||||||||| ||  ||||||||||| ||||||    
T  17345728 tttactcattgattactacttcctttgctccacacatctttgtttcattggtgtggtttcttgtccgaattcacaaca 17345805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 17345432 - 17345501
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||||| ||| ||| || || ||||||||    
T  17345432 ttttctcttaagattcattaagagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgt 17345501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 9022817 - 9022857
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaa 173  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  9022817 ttttctcttaggattcattgtgagtgtggttgacttgaaaa 9022857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29651682 - 29651619
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacag 77  Q
    ||||| |||||||||||||||||||||  || |||||||||| ||||||||||||| |||||||    
T  29651682 cacttcctttgctccacacatctttgttattcattggtgtgatttttgtccgaattcacaacag 29651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50521312 - 50521389
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| ||| || ||||| |||| |||||||||||||| |||   |||| |||||||||||||||||| ||||||    
T  50521312 tttactcattgattaccacttcctttactccacacatctttattttttattgatgtgattttgtccgaattcacaaca 50521389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 35109450 - 35109519
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    ||||||| ||||||||||||||||||||  |||||| |||| ||||| ||| |||||  || ||||||||    
T  35109450 ttttctcgtaggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgt 35109519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 18554502 - 18554563
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||    
T  18554502 cactttctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 4387249 - 4387307
Alignment:
Q  18 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||  ||||||||||||    
T  4387249 acttcctttgctccacacatctttgtttcattgctgtgattttgtaggaattaacaaca 4387307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 3323778 - 3323839
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| |||||| ||||||    
T  3323778 cacttcctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 3323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 6794927 - 6794988
Alignment:
Q  17 cactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  6794927 cacttcctttgctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaaca 6794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 37466157 - 37466102
Alignment:
Q  23 ctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||| ||||||||||||  | ||||||||||||||||||||||| ||||||    
T  37466157 ctttgctcctcacatctttgttatttattggtgtgattttgtccgaattcacaaca 37466102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 1417704 - 1417753
Alignment:
Q  17 cactttctttgctccacacatctttg--tttgattggtgtgattttgtcc 64  Q
    ||||| ||||||||||||||||||||  ||| ||||||||||||||||||    
T  1417704 cacttcctttgctccacacatctttgtttttcattggtgtgattttgtcc 1417753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 2074938 - 2074881
Alignment:
Q  23 ctttgctccacacatctttgtttgattggtgtgatttt--gtccgaattaacaacaga 78  Q
    |||||||||||||||| | |||| ||||||||||||||  ||||||||| ||||||||    
T  2074938 ctttgctccacacatcatagttttattggtgtgattttgggtccgaattcacaacaga 2074881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 25929299 - 25929332
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgac 166  Q
    ||||||||||||||||||||||||||||| ||||    
T  25929299 ttttctcttaggattcattgtgagtgtgggtgac 25929332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 27986667 - 27986720
Alignment:
Q  24 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||| ||||||||||||  |||||||||| |||||||||||| ||||||    
T  27986667 tttgctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4387130 - 4387186
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgat 57  Q
    |||||||| ||| ||  |||||||||||||||||||| ||||||| |||||| ||||    
T  4387130 tttactcattgattactactttctttgctccacacatttttgtttcattggtatgat 4387186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 25795964 - 25795899
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattcttt 200  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||| ||| ||| ||||| ||||||    
T  25795964 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttt 25795899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 48438080 - 48438025
Alignment:
Q  23 ctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||| |||||  | |||| |||||||||||||||||| ||||||    
T  48438080 ctttgctccacacatccttgttattcattgatgtgattttgtccgaattcacaaca 48438025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 19588618 - 19588556
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  19588618 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 19588556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 42127634 - 42127695
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||||||||  || ||| ||||||||||||||||||| ||||||    
T  42127634 cactttctttgctccacacatctttgttattcattagtgtgattttgtccgaattcacaaca 42127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10281732 - 10281673
Alignment:
Q  19 ctttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| |||| ||||||    
T  10281732 ctttctttgctccacacatctttgttattcattggtgtgattttgtccaaattcacaaca 10281673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 42126632 - 42126693
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||| |||||||| ||||||    
T  42126632 cacttcctttgctccacacatctttgttattcattggtgtgattttatccgaattcacaaca 42126693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 7160817 - 7160885
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    |||||||||||||||||||| |||||| | |||||||||||||  || ||| ||||||||| ||||||||    
T  7160817 ttttctcttaggattcattgagagtgtag-tgacttaaaaaatatgtagaaattaagtcttgttctttgt 7160885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33031178 - 33031231
Alignment:
Q  23 ctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||    
T  33031178 ctttgctccacacatctttattttattggtgtgtttttgtccaaattcacaaca 33031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 36932582 - 36932635
Alignment:
Q  24 tttgctccacacatctttgttt-gattggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||| ||||||    
T  36932582 tttgctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 3880167 - 3880112
Alignment:
Q  24 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  3880167 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 3880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 6741722 - 6741654
Alignment:
Q  20 tttctttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaacagatatatatga 87  Q
    ||||||||||||||||||||||| ||| |||| ||| |||||||| ||||| |||||||| | ||||||    
T  6741722 tttctttgctccacacatctttgttttcattgatgttattttgtctgaattcacaacagagacatatga 6741654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 33030854 - 33030922
Alignment:
Q  134 tttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    ||||||||||||||||||| |||||||  |||||| |||||||||| ||| ||| || || ||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgt 33030922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 2630415 - 2630372
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatg 176  Q
    |||||||||||||||||||||||||| || |||||| |||||||    
T  2630415 ttttctcttaggattcattgtgagtgagggtgacttgaaaaatg 2630372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 11182059 - 11182120
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| | |||| ||||||    
T  11182059 cacttactttgctccacacatctttgttattcattggtgtgattttgttcaaattcacaaca 11182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 28832132 - 28832071
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||| ||||||||||||| || ||||||    
T  28832132 cacttcctttgctccacacatctttgttattcattggtatgattttgtccgatttcacaaca 28832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 6742036 - 6741967
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    |||| ||||||||||||||| |||||||| |||||| ||||||| || ||| ||| || || ||||||||    
T  6742036 ttttttcttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgt 6741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 11181745 - 11181778
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgac 166  Q
    ||||||||||||||||||||||||||||| ||||    
T  11181745 ttttctcttaggattcattgtgagtgtgggtgac 11181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 17004192 - 17004244
Alignment:
Q  24 tttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaa 74  Q
    |||||||||||| |||||||||   ||||||||||||||||||||||| ||||    
T  17004192 tttgctccacacctctttgtttttcattggtgtgattttgtccgaattcacaa 17004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7493294 - 7493352
Alignment:
Q  18 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||| |||||||||||||||| | |||| ||||||||||||||||||||||| ||||||    
T  7493294 acttcctttgctccacacatcatagttttattggtgtgattttgtccgaattcacaaca 7493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 9766042 - 9766106
Alignment:
Q  14 tatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||||||| ||||| ||||||    
T  9766042 tatcacttcctttgctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 9766106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 5990785 - 5990843
Alignment:
Q  18 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 76  Q
    |||| ||||||||| ||||||||||||| |||| |||||||||||| ||||| ||||||    
T  5990785 acttcctttgctccgcacatctttgttttattgatgtgattttgtcggaattcacaaca 5990843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 6813543 - 6813489
Alignment:
Q  23 ctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  6813543 ctttgctcaacacatctttgttttcattggtgtgattttgtccgaattcacaaca 6813489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 31513245 - 31513279
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgact 167  Q
    |||||||||||||||||||||||||||||||||||    
T  31513245 ttttctcttaggattcattgtgagtgtggatgact 31513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 28307421 - 28307368
Alignment:
Q  24 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||| ||||||    
T  28307421 tttgctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 23799803 - 23799863
Alignment:
Q  17 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||| ||| |||  |||||||||||||||| |||||| ||||||    
T  23799803 cactttctttgctccacacatattttttttcattggtgtgattttgtacgaattcacaaca 23799863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 5990474 - 5990521
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtg 180  Q
    ||||||||||||||||||||  ||||||| |||||| |||||||||||    
T  5990474 ttttctcttaggattcattgaaagtgtgggtgacttgaaaaatgggtg 5990521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 6127083 - 6127029
Alignment:
Q  24 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  6127083 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 6127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 9054750 - 9054796
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 179  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||    
T  9054750 ttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggt 9054796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 26287767 - 26287706
Alignment:
Q  24 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 83  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26287767 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 26313018 - 26312957
Alignment:
Q  24 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 83  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26313018 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 26403463 - 26403515
Alignment:
Q  24 tttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaa 74  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||||| ||||    
T  26403463 tttgctccacacatctttgttattcattggtgtggttttgtccgaattcacaa 26403515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 3051303 - 3051235
Alignment:
Q  134 tttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtggaagttaagtcttattctttgt 202  Q
    ||||||||||||||||||| ||||||   |||| | |||||||||| ||| |||||| || ||||||||    
T  3051303 tttctcttaggattcattgagagtgtaagtgacatgaaaaatgggtagaaattaagttttgttctttgt 3051235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 5572821 - 5572882
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  5572821 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 5572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27165573 - 27165513
Alignment:
Q  18 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaacaga 78  Q
    |||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||| ||||    
T  27165573 acttcctttgctccacacatctttgttatattggtgtaattttgtacgaattaacatcaga 27165513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 31979385 - 31979323
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 77  Q
    ||||| ||||||||||||||||||||||  | | ||||||||||||||||||||| |||||||    
T  31979385 cacttcctttgctccacacatctttgttatttagtggtgtgattttgtccgaattcacaacag 31979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 31086687 - 31086749
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  31086687 cacttcctttgctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaaca 31086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 1115017 - 1115061
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgg 177  Q
    ||||||||||  ||||||||||||||||| |||||| ||||||||    
T  1115017 ttttctcttaatattcattgtgagtgtgggtgacttgaaaaatgg 1115061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 21801584 - 21801627
Alignment:
Q  28 ctccacacatctttgtt--tgattggtgtgattttgtccgaatt 69  Q
    |||||||||||||||||  | |||||||||||||||||||||||    
T  21801584 ctccacacatctttgttattcattggtgtgattttgtccgaatt 21801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 25862247 - 25862308
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  25862247 cacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 54867054 - 54866991
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacaga 78  Q
    ||||| ||||||||||||||||||||||  | ||||||||||||||||| ||||| ||||||||    
T  54867054 cacttcctttgctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaga 54866991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 34496054 - 34496109
Alignment:
Q  23 ctttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaacag 77  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||    
T  34496054 ctttgctccacacatctttgttttcattggtgtgattttgaccgaattcacaacag 34496109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 5112421 - 5112379
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaat 175  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  5112421 ttttctcttaggattcattgtgagtgtgagtgacttaaaaaat 5112379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10047251 - 10047190
Alignment:
Q  17 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| ||||||||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  10047251 cacttcctttgctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 1983525 - 1983577
Alignment:
Q  18 actttctttgctccacacatctttg-tttgattggtgtgattttgtccgaatt 69  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  1983525 acttcctttgctccacacatctttgttttcatttgtgtgattttgtccgaatt 1983577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5112128 - 5112052
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    |||||||| ||| || ||||  ||||||||||||||| |||||||  |||||||||||||| |||||||| ||||||    
T  5112128 tttactcattgattaccactccctttgctccacacatttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 34670578 - 34670622
Alignment:
Q  133 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgg 177  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||    
T  34670578 ttttctcttaggattcattgtgagtgtgagtgacttgaaaaatgg 34670622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 24333675 - 24333621
Alignment:
Q  24 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 76  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  24333675 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 24333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 5269419 - 5269488
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacagatatat 83  Q
    ||||| |||||||||||||||||||||  || ||| |||| | ||||||||||||| |||||||||||||    
T  5269419 cacttcctttgctccacacatctttgttatttattagtgtaatttttgtccgaattcacaacagatatat 5269488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16624218 - 16624279
Alignment:
Q  1 tttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgatttt 60  Q
    ||||| || ||| |||||||| |||||||||||||||||||||  || ||||||||||||||    
T  16624218 tttacacattgattatcacttcctttgctccacacatctttgttattcattggtgtgatttt 16624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 133513 - 133566
Alignment:
Q  24 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  133513 tttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 17138 - 17077
Alignment:
Q  17 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 76  Q
    ||||| |||||||||||||||||||||  || |||  |||||||||||||||||| ||||||    
T  17138 cacttcctttgctccacacatctttgttattcattcatgtgattttgtccgaattcacaaca 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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