View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_6 (Length: 527)
Name: NF1634_low_6
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 8086785 - 8087279
Alignment:
| Q |
17 |
atattcaaccaagcgaatatccttggtatgcttgtcattcccatttagtcaaactcattcgtaatttcccagccctttcttttatttatttatctcgtcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8086785 |
atattcaaccaagcgaatatccttggtatgcttgtcattcccatttagtcaaactcattcgtaatttcccagccctttcttttatttatttatgtcgtcc |
8086884 |
T |
|
| Q |
117 |
aattaacgtgactcctatttgaaacataatcctcgtgttcaataattcttaactgaatttccgttttggactttgatactactctcttctaaataaacac |
216 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8086885 |
aattaatgtgactcctatttgaaatataatcctcgtgttcaataattcttaactgaatttccgttttggactttgatactactctcttctaaataaacac |
8086984 |
T |
|
| Q |
217 |
taagcaggtacacacatacatacatgctcctaactccttcaacatttttggtctcaattcaattcatatcatatcataagataagatatgcatgtcatca |
316 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8086985 |
taagcaggtacaaacatacatacatgctccaaactccttcaacatttttggtc-----tcaattcatatcatatcataagataagatatgcatgtcatca |
8087079 |
T |
|
| Q |
317 |
acgtgttatttctttcatttcaaccaaattcagttggtcttta-tttttcttcttagacttaaaattgttataaagttactctataatatatattatacg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8087080 |
acgtgttatttctttcatttcaaccaaattcagttggtctttattttttcttcttagacttaaaattgttataaagttactctatagtatatattatacg |
8087179 |
T |
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| Q |
416 |
aatttgtgcaggttttgaannnnnnnnacaaaaatgggatcggtttgttcagctggtaaggcagagaaaaataaaaataatgatgagatggaagtgtctg |
515 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8087180 |
aatttgtgcaggttttgaa-tttttttac-aaaatgggatcggtttgttcagctggtaaggcagagaaaaataaaaataatgatgagatggaagtgtctg |
8087277 |
T |
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