View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1634_low_7 (Length: 511)
Name: NF1634_low_7
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1634_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 33 - 333
Target Start/End: Complemental strand, 23018230 - 23017928
Alignment:
| Q |
33 |
aagggaaatac--tccctcactctccctcatcgccttctctggttcgagacagttagagtcgccgtcgcatttcatcactgtcatcgttggttactcaat |
130 |
Q |
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| T |
23018230 |
aagggaaatacgttccctcactctccctcatcgccttctctggttcgagacagttagagtcgccgtcgcatttcatcactgtcatcgttggttactcaat |
23018131 |
T |
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| Q |
131 |
ctctccgccctggaactgtctttgttacttgttcaaggtgataatttgcatttcgaaattgcaaaactaatttatgtatccttatttgtttagtgactct |
230 |
Q |
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| T |
23018130 |
ctctccgccctcgaactgtctttgttacttgttcaaggtgataatttgcatttcgaaattgcaaaactaatttatgtatccttatttgtttagtgactct |
23018031 |
T |
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| Q |
231 |
tcatcatcctgactaagtctagttttaacggaaaattaattaccaaaaacatagaaaactatatactaggtgcttctattatcaaacttaattcctttta |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23018030 |
tcatcatcctgactaagtctagttttaacggaaaattaattaccaaaaacatagaaaactatatactaggtgcttctattatcaaacttaattccttata |
23017931 |
T |
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| Q |
331 |
tgc |
333 |
Q |
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||| |
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| T |
23017930 |
tgc |
23017928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 382 - 494
Target Start/End: Complemental strand, 23017839 - 23017727
Alignment:
| Q |
382 |
tgttgaattttgatctttattgttaaagttgaatgtcgatttgataaaatgaccacaaggtattaacattgacaaaaaattcagtgttgttaattgttaa |
481 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23017839 |
tgttgaattttgatctttattgttaaagttgaatgtccatttgataaaatgaccacaaggtattaacattgacaaaaatttcagtgttgttaattgttaa |
23017740 |
T |
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| Q |
482 |
attacgtaaagaa |
494 |
Q |
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| T |
23017739 |
attacgtaaagaa |
23017727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 23017899 - 23017853
Alignment:
| Q |
341 |
ctaatttcagtgtttaccaatttctttctctggtaggtgaatgttga |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017899 |
ctaatttcagtgtttaccaatttctttctctggtaggtgaatgttga |
23017853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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