View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_8 (Length: 502)

Name: NF1634_low_8
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_8
NF1634_low_8
[»] chr8 (5 HSPs)
chr8 (356-482)||(42807110-42807236)
chr8 (231-355)||(42807435-42807560)
chr8 (65-113)||(42807705-42807753)
chr8 (1-64)||(39914495-39914558)
chr8 (1-38)||(36408557-36408594)
[»] chr3 (7 HSPs)
chr3 (231-354)||(31152951-31153074)
chr3 (1-67)||(22968568-22968634)
chr3 (1-64)||(6269550-6269613)
chr3 (1-60)||(22922141-22922200)
chr3 (1-64)||(19390126-19390189)
chr3 (1-60)||(34084246-34084305)
chr3 (1-64)||(39771770-39771833)
[»] chr6 (4 HSPs)
chr6 (240-353)||(25361436-25361549)
chr6 (3-64)||(13837801-13837862)
chr6 (1-64)||(398597-398660)
chr6 (1-65)||(34948882-34948946)
[»] chr7 (7 HSPs)
chr7 (1-64)||(14777231-14777294)
chr7 (1-64)||(3114220-3114283)
chr7 (1-64)||(5555467-5555530)
chr7 (1-60)||(8394109-8394168)
chr7 (1-60)||(36630800-36630859)
chr7 (1-29)||(33685579-33685607)
chr7 (4-36)||(43184595-43184627)
[»] chr2 (9 HSPs)
chr2 (1-64)||(17445163-17445226)
chr2 (1-64)||(41251758-41251821)
chr2 (358-455)||(41638034-41638134)
chr2 (1-64)||(42439966-42440029)
chr2 (1-71)||(35962688-35962758)
chr2 (1-64)||(6403928-6403991)
chr2 (5-64)||(2958228-2958287)
chr2 (1-64)||(16405580-16405643)
chr2 (1-64)||(32127265-32127328)
[»] chr5 (8 HSPs)
chr5 (1-61)||(13817960-13818020)
chr5 (1-64)||(3155755-3155818)
chr5 (1-64)||(26283442-26283505)
chr5 (1-61)||(10033910-10033970)
chr5 (4-64)||(39434676-39434736)
chr5 (8-61)||(14316641-14316694)
chr5 (3-60)||(1776502-1776559)
chr5 (3-64)||(36293747-36293808)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-64)||(502-565)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-64)||(17822-17885)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-65)||(480581-480645)
[»] chr1 (6 HSPs)
chr1 (1-65)||(26144234-26144298)
chr1 (240-292)||(27754163-27754211)
chr1 (1-66)||(42311065-42311130)
chr1 (6-64)||(23313218-23313276)
chr1 (65-110)||(34503087-34503132)
chr1 (1-57)||(32982180-32982236)
[»] chr4 (9 HSPs)
chr4 (1-64)||(13012168-13012231)
chr4 (1-64)||(20129290-20129353)
chr4 (1-64)||(47500753-47500816)
chr4 (1-66)||(29319829-29319894)
chr4 (1-61)||(6235515-6235575)
chr4 (1-65)||(34407408-34407472)
chr4 (1-64)||(25930688-25930751)
chr4 (1-64)||(26439403-26439466)
chr4 (1-60)||(36382469-36382528)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 42807236 - 42807110
Alignment:
Q  356 ttaggtttggtcgtttggaatcatagcctagagaaaccatttaggtggttgatgtgtagcaaagtttggtttgaccatgaatctaatttcaagattttta 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42807236 ttaggtttggtcgtttggaatcatagcctagagaaaccatttaggtggttgatgtgtagcaaagtttggtttgaccatgaatctaatttcaagattttta 42807137  T
Q  456 gttcttatatttcttttcattcaggct 482  Q
    |||||||||||||||||||||||||||    
T  42807136 gttcttatatttcttttcattcaggct 42807110  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 42807560 - 42807435
Alignment:
Q  231 catgagatctgtaacaacctttgttgttgtttgttaaataaacgagtagaaacaaatttacaaaact-atcctttagttaatactactttaatatagtag 329  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||    
T  42807560 catgagatctgtaacaacctttgttgttgtttgttaaataaatgagtagaaacaaatttacaaaactaatcctttagttaatactagtttaaaatagtag 42807461  T
Q  330 atagtggttttttggtaaaatacaat 355  Q
    |||||| |||||||||||||||||||    
T  42807460 atagtgattttttggtaaaatacaat 42807435  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 42807753 - 42807705
Alignment:
Q  65 cttccaattaatttcgatacatggcgggaacaaaaggaggaacattaat 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42807753 cttccaattaatttcgatacatgccgggaacaaaaggaggaacattaat 42807705  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39914558 - 39914495
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| |||||| |||||    
T  39914558 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36408594 - 36408557
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgag 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  36408594 tgcaaaaattatcgatcgagcccgggcgaccgcccgag 36408557  T

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Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 31153074 - 31152951
Alignment:
Q  231 catgagatctgtaacaacctttgttgttgtttgttaaataaacgagtagaaacaaatttacaaaactatcctttagttaatactactttaatatagtaga 330  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  31153074 catgggatttgtaacaacctttgttgttgtttgttaaataaatgagcagaaacaaatttacaaaactatcctttagttaatactagtttaaaatagtaga 31152975  T
Q  331 tagtggttttttggtaaaatacaa 354  Q
    |||||||||||| |||||||||||    
T  31152974 tagtggttttttagtaaaatacaa 31152951  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22968568 - 22968634
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgctt 67  Q
    ||||||||||||||||||||||||  ||| |||||| | || | |||||||||||||||||||||||    
T  22968568 tgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatgctt 22968634  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6269550 - 6269613
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||| |||  ||| |||||| |||| | ||||||||||||||||||||    
T  6269550 tgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22922200 - 22922141
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    ||||||||| ||||||||||||||||||| |||||| |||| ||| ||||| ||||||||    
T  22922200 tgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19390189 - 19390126
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||||| ||||  ||| |||||| | || ||||||||||||||| ||||||    
T  19390189 tgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34084246 - 34084305
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    |||||||||||||||||||| ||| |||| |||||| | || ||| ||||||||||||||    
T  34084246 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39771833 - 39771770
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||| |||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  39771833 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 39771770  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 25361549 - 25361436
Alignment:
Q  240 tgtaacaacctttgttgttgtttgttaaataaacgagtagaaacaaatttacaaaactatcctttagttaatactactttaatatagtagatagtggttt 339  Q
    ||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||    
T  25361549 tgtaaaaacctttgttgttgtttgttaaataaattagtagaaataaatttacaaaactatcctttaattaacactagtttaaaatagtagatagtggttt 25361450  T
Q  340 tttggtaaaataca 353  Q
    ||||||||||||||    
T  25361449 tttggtaaaataca 25361436  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 13837862 - 13837801
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||| |||||||||||||||| | || ||| ||||||||||||||||||    
T  13837862 caaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 398660 - 398597
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  398660 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34948882 - 34948946
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgc 65  Q
    |||||||||||||||||||||| | |||| |||| | | || ||| |||||||||||||||||||    
T  34948882 tgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatgc 34948946  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14777231 - 14777294
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| |||| | ||||||||||||||||||||    
T  14777231 tgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3114220 - 3114283
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| || ||| | |||||| ||||||||||||||||||    
T  3114220 tgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatg 3114283  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5555530 - 5555467
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || ||| ||||||||||||||||||    
T  5555530 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8394168 - 8394109
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    |||||||||||||||||||||||| |||| |||||| | || ||| ||||||||||||||    
T  8394168 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36630859 - 36630800
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    |||||||||||||||||||||||| |||| || ||| | || ||| ||||||||||||||    
T  36630859 tgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33685607 - 33685579
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcga 29  Q
    |||||||||||||||||||||||||||||    
T  33685607 tgcaaaaattatcgatcgagcccgagcga 33685579  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 43184595 - 43184627
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgatcgcccg 36  Q
    |||||||||||||||||||||||||| ||||||    
T  43184595 aaaaattatcgatcgagcccgagcgaccgcccg 43184627  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17445163 - 17445226
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||||||| || |||| |||||||| || ||||||||||||||||||||||    
T  17445163 tgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41251758 - 41251821
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | |||| ||||||||||||||||||||    
T  41251758 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 358 - 455
Target Start/End: Complemental strand, 41638134 - 41638034
Alignment:
Q  358 aggtttggtcgtttggaatcatagcct-agagaaaccatttaggtggttgat-gtgtagcaaagtttggtttgaccatgaatcta-atttcaagattttt 454  Q
    ||||||||| ||||| |||||| | || |||||| ||| ||||||||||||| ||  ||||||||||||||||||||| |||||| ||||||||||||||    
T  41638134 aggtttggttgtttgaaatcattggctcagagaagccaattaggtggttgatcgtccagcaaagtttggtttgaccatcaatctagatttcaagattttt 41638035  T
Q  455 a 455  Q
    |    
T  41638034 a 41638034  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42440029 - 42439966
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || ||| ||||||||||||||||||    
T  42440029 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35962758 - 35962688
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgcttccaa 71  Q
    ||||||||||||||||||||||||  ||| |||| | | || ||| |||||||||||||||||||||||||    
T  35962758 tgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatgcttccaa 35962688  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6403928 - 6403991
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  6403928 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 6403991  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 2958228 - 2958287
Alignment:
Q  5 aaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||||||  ||| |||||| | || ||| ||||||||||||||||||    
T  2958228 aaaattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16405643 - 16405580
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||| ||||||| |||| |||||  | |||||| | ||||||||||||||||    
T  16405643 tgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatg 16405580  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32127265 - 32127328
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||| ||||||||||| |||| |||||| | || ||| ||| ||||||||||||||    
T  32127265 tgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatg 32127328  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13818020 - 13817960
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgccc 61  Q
    ||||||||||||||||||||||||||||| |||||| | || ||| |||||||||||||||    
T  13818020 tgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3155755 - 3155818
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||| |||||||||||||||| |||||| |||| ||| ||| ||||||||||||||    
T  3155755 tgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26283442 - 26283505
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||||| || | ||||||| ||||||||||||    
T  26283442 tgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10033970 - 10033910
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgccc 61  Q
    |||||||||||||||||||||||| ||||||| ||| | || ||| |||||||||||||||    
T  10033970 tgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 39434736 - 39434676
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||||||| |||| |||||  | || ||||||||||||||||||||||    
T  39434736 aaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  8 attatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgccc 61  Q
    ||||||||||||||| | |||| ||||||||||| ||| |||||||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1776502 - 1776559
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    |||||||||||||||||||||| |||| |||||| | ||  || ||||||||||||||    
T  1776502 caaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 36293747 - 36293808
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||| |||  ||| ||| || | || ||||||||||||||||||||||    
T  36293747 caaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatg 36293808  T

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Target: scaffold2142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 565 - 502
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| |||| | ||||||| ||||||||||||    
T  565 tgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatg 502  T

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Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17885 - 17822
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||||||||||||  ||||||| || | || ||||||||||||||||||||||    
T  17885 tgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatg 17822  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 480581 - 480645
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgc 65  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| |||||||||||||    
T  480581 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 480645  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26144298 - 26144234
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgc 65  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| |||||||||||||    
T  26144298 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 26144234  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 27754163 - 27754211
Alignment:
Q  240 tgtaacaacctttgttgttgtttgttaaataaacgagtagaaacaaatttaca 292  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  27754163 tgtaacaacctttgttgttgtttgttaaat----gagtagaaacaaatttaca 27754211  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42311065 - 42311130
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgct 66  Q
    |||||||||||||||||||||||| ||||||| | | | || ||| ||||||||||||||| ||||    
T  42311065 tgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgcccctgct 42311130  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 23313276 - 23313218
Alignment:
Q  6 aaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||| ||| |||||||||| || | ||||||||||| ||| ||||||||||||||||||    
T  23313276 aaatcatcaatcgagcccgggcaaccgcccgagatcgccatacggtagaaccgcccatg 23313218  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 34503087 - 34503132
Alignment:
Q  65 cttccaattaatttcgatacatggcgggaacaaaaggaggaacatt 110  Q
    ||||||||||| |||||| ||||  |||||||||||||||||||||    
T  34503087 cttccaattaacttcgatgcatgctgggaacaaaaggaggaacatt 34503132  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32982180 - 32982236
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaacc 57  Q
    |||||||||||||||||| ||||| |||| |||||| | || ||| |||||||||||    
T  32982180 tgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13012231 - 13012168
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  13012231 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 13012168  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20129353 - 20129290
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  20129353 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47500816 - 47500753
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||||||||||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  47500816 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29319829 - 29319894
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgct 66  Q
    |||||||||||||||||||||| |  ||| |||| | | |||||| ||||||||||||||||||||    
T  29319829 tgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatgct 29319894  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6235575 - 6235515
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgccc 61  Q
    |||||||||||||| |||||||||||||| |||||   ||| ||| |||||||||||||||    
T  6235575 tgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgccc 6235515  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34407408 - 34407472
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatgc 65  Q
    ||||||||||||||| |||||||| |||| |||||| | || | ||||||| |||||||||||||    
T  34407408 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 34407472  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25930751 - 25930688
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    |||||||||||| ||||||||||| |||| |||||  | || ||| ||||||||||||||||||    
T  25930751 tgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26439403 - 26439466
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcccatg 64  Q
    ||||||||||||||| |||||||| |||| |||||| | || | ||||||| ||||||||||||    
T  26439403 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36382469 - 36382528
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgatcgcccgagatcaccacacggtagaaccgcc 60  Q
    |||||||||||| ||||||||||| |||| |||||| | || ||| ||||||||||||||    
T  36382469 tgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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