View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1634_low_9 (Length: 446)

Name: NF1634_low_9
Description: NF1634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1634_low_9
NF1634_low_9
[»] chr1 (7 HSPs)
chr1 (1-429)||(32607147-32607576)
chr1 (95-349)||(32568829-32569083)
chr1 (220-321)||(32617952-32618053)
chr1 (197-277)||(32599129-32599209)
chr1 (1-55)||(32568744-32568798)
chr1 (1-59)||(32575167-32575225)
chr1 (76-116)||(32574452-32574492)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 32607147 - 32607576
Alignment:
Q  1 aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgacttaattgtgagctatacggaagaactatacactgagcacaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  32607147 aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt----gtgagctatacggaagaactatacactgagcacaaag 32607242  T
Q  101 attcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagtagtgttttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  32607243 attcttcgaagtctcagctaaagaagttgattaaaaggtagaactctcattcatcca-acctgtaaatactttccaatcacaaatcagtagagttttctt 32607341  T
Q  201 caagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32607342 caagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattg 32607441  T
Q  301 gtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagct------caacaaccatagagatattatcacaaagcttaaatacagataaat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  32607442 gtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagctcaaaagcaacaaccatagagatattatcacaaagcttaaatacagataaat 32607541  T
Q  395 tttctgatggaaatcttttcttagattgtcctctg 429  Q
    |||||||||||||||||||||||||||||||||||    
T  32607542 tttctgatggaaatcttttcttagattgtcctctg 32607576  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 95 - 349
Target Start/End: Original strand, 32568829 - 32569083
Alignment:
Q  95 acaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagtagtgt 194  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||  || ||||||||||| | |||||||||| |  | ||||||||||||||||  ||    
T  32568829 acaaagattcttcaaagtctcagctaaagaagctgattaaaaggtcaaactctcattcatcaatacctgtaaatgctattcaatcacaaatcagtaaagt 32568928  T
Q  195 tttcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttc 294  Q
    ||||| |||||||||||| ||  ||||||||| |||||||||||| |||||||||||||||||  ||||||   |  ||||| |||||||||| ||  |     
T  32568929 tttctacaagggtttatttttccgacatgttagtggacttgacaataggattccaaagcatatggtgagcgcagatgagaaatatcttcgtcgctgtctt 32569028  T
Q  295 aaattggtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagct 349  Q
     |||| || |||||   |||||| |||||| |||||||||||| |||| ||||||    
T  32569029 gaattcgtacataaccatgcagtaaaagcaactcaatggaacatacctttgagct 32569083  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 32617952 - 32618053
Alignment:
Q  220 catgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattggtgcataaatttgcagtta 319  Q
    ||||||||||||||  |||| ||||||  |||||||||  |||||||| || |||||||||| |||| ||||||| ||||||| ||||| | |||| |||    
T  32617952 catgttaatggactacacaataggatttgaaagcatatggtgagcgtggacgagaaacatctccgtcaatgcttcgaattggtacataattgtgcactta 32618051  T
Q  320 aa 321  Q
    ||    
T  32618052 aa 32618053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 32599129 - 32599209
Alignment:
Q  197 tcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaac 277  Q
    ||||||||||||||||  || | |||||||||||||||||||| ||| ||||||| |||||  |||||||| || ||||||    
T  32599129 tcttcaagggtttatttcttcgccatgttaatggacttgacaatagggttccaaaccatatggtgagcgtggacgagaaac 32599209  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32568744 - 32568798
Alignment:
Q  1 aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttg 55  Q
    ||||||||||| ||| |||||||| | ||||||||||||| |||||| |||||||    
T  32568744 aatgtaagcttatgggttcaaaaagagggtcaatggaaaaaagattcattgcttg 32568798  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32575167 - 32575225
Alignment:
Q  1 aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt 59  Q
    ||||||||||| |  ||||| ||| |||| |||||||||| ||||||||||||||||||    
T  32575167 aatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgactt 32575225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 32574452 - 32574492
Alignment:
Q  76 gaagaactatacactgagcacaaagattcttcgaagtctca 116  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  32574452 gaagcactatacactgaacgcaaagattcttcgaagtctca 32574492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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