View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16350_high_2 (Length: 338)
Name: NF16350_high_2
Description: NF16350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16350_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 43440296 - 43439986
Alignment:
| Q |
10 |
ataatactcagtctaaagcgaagtgtgagaccattctctaatttcagtagatggtgagaccattgtctcagaggtgagagttgacgccgttatttaagag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43440296 |
ataatactcagtctaaagcgaagtgtgagaccattctctaatttcagtagatggtgagaccattgtctcagaggtgagagttgacgccgttatttaagag |
43440197 |
T |
|
| Q |
110 |
gtgggactgaactcacagttgcttttaaattttaagaggtgaggcctaaaacaaggaacttgagtgaccttgcgcccttgtgtcggccttggttgtaatg |
209 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43440196 |
gtgggactgaattcacagttacttttaaattttaagaggtgaggcctaaaacaaggaacttgagtgacctttcgcccttgtgtcggccttggttgtaatg |
43440097 |
T |
|
| Q |
210 |
gaatagtttatcatcatatatacattcaagtgacagaaaaggttagcaatgcataaagaaaaaataacagaaatggaactaaagattgacatgaaggaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43440096 |
gaatagtttatcatcatatatacattcaagtgacagaaaaggttagcaatgcataaagaaaaaataacagaaatggaact-aagattgacatgaaggaag |
43439998 |
T |
|
| Q |
310 |
gagccttaaaat |
321 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43439997 |
gagccttaaaat |
43439986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 43742828 - 43742518
Alignment:
| Q |
10 |
ataatactcagtctaaagcgaagtgtgagaccattctctaatttcagtagatggtgagaccattgtctcagaggtgagagttgacgccgttatttaagag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43742828 |
ataatactcagtctaaagcgaagtgtgagaccattctctaatttcagtagatggtgagaccgttgtctcagaggtgagagttgacgccgttatttaagag |
43742729 |
T |
|
| Q |
110 |
gtgggactgaactcacagttgcttttaaattttaagaggtgaggcctaaaacaaggaacttgagtgaccttgcgcccttgtgtcggccttggttgtaatg |
209 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
43742728 |
gtgggactgaattcacagttactttcaaattttaagaggtgaggcctaaaacaaggaacttgagtgacctttcacccttgtgtcggccttggttgtaatg |
43742629 |
T |
|
| Q |
210 |
gaatagtttatcatcatatatacattcaagtgacagaaaaggttagcaatgcataaagaaaaaataacagaaatggaactaaagattgacatgaaggaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43742628 |
gaatagtttatcatcatatatacattcaagtgacagaaaaggttagcaatgcataaagaaaaaataacagaaatggaact-aagattgacatgaaggaag |
43742530 |
T |
|
| Q |
310 |
gagccttaaaat |
321 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43742529 |
gagccttaaaat |
43742518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University