View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16350_low_2 (Length: 433)
Name: NF16350_low_2
Description: NF16350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16350_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 39469814 - 39469407
Alignment:
| Q |
18 |
acaatcttgaaggaagaattccatcacaaattggtaacattacttctttgcagtttttagatctttctgataacaatttgtcaggaaaaattccagatga |
117 |
Q |
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| T |
39469814 |
acaatcttgaaggaagaattccttcacaaattggtaacattacttctttgcagtttttagatctttctgataacaatttgtcaggaaaaattccagatga |
39469715 |
T |
|
| Q |
118 |
aatgagtcttctgaagaatttgaagcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39469714 |
aatgagtcttctgaagaatttgaagcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtt |
39469615 |
T |
|
| Q |
218 |
tttgagctatggaacaattcattatcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgtatcatccaattcactctctg |
317 |
Q |
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| T |
39469614 |
tttgagctatggaacaattcattatcaggtccattgcctagtaacctcggcgagaattcaccattgcaatggttggatgtatcatccaattcactctctg |
39469515 |
T |
|
| Q |
318 |
gagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtg |
417 |
Q |
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| T |
39469514 |
gagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtg |
39469415 |
T |
|
| Q |
418 |
ttcatctc |
425 |
Q |
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| T |
39469414 |
ttcttctc |
39469407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 98 - 411
Target Start/End: Original strand, 30088217 - 30088530
Alignment:
| Q |
98 |
tcaggaaaaattccagatgaaatgagtcttctgaagaatttgaagcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaa |
197 |
Q |
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|||||||| ||||||| |||||| |||| || ||||||||| ||||||||||||| ||| | ||| || |||||||| ||| |||||||| |||||| |
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| T |
30088217 |
tcaggaaatattccagctgaaataagtcagctaaagaatttgcagcttctgaactttatgaggaacaagctatctggtcctgtaccttctggccttggag |
30088316 |
T |
|
| Q |
198 |
atttgcctcaattggaggtttttgagctatggaacaattcattatcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgt |
297 |
Q |
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||||||||||| | ||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||| || |||| ||||||||||| |
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| T |
30088317 |
atttgcctcaactagaggtgcttgagctatggaacaattctttgtcagggccattgcctagagacctcggcaagaattcgccgctgcagtggttggatgt |
30088416 |
T |
|
| Q |
298 |
atcatccaattcactctctggagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaatt |
397 |
Q |
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||| |||||||||||||| || |||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||| ||| |
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| T |
30088417 |
atcgtccaattcactctccggcgagattcctgaaactctttgcactaagggaaatctcaccaagcttatacttttcaacaatgccttcaagggtccgatt |
30088516 |
T |
|
| Q |
398 |
ccatcaagcctatc |
411 |
Q |
| |
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||| |||||||||| |
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|
| T |
30088517 |
ccaacaagcctatc |
30088530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 44262096 - 44261990
Alignment:
| Q |
313 |
ctctggagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatca |
412 |
Q |
| |
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||||||||||||| |||||||||| ||||| | || ||||| || | | ||||||||||| | ||||||||||||||||||||||||||| ||| || |
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| T |
44262096 |
ctctggagagattaaagaaactcttggcagccaaggaaatctcacaacattgatacttttcaatattgctttctctggtccaattccatcaagactacca |
44261997 |
T |
|
| Q |
413 |
atgtgtt |
419 |
Q |
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||||||| |
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|
| T |
44261996 |
atgtgtt |
44261990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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