View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16351_high_1 (Length: 365)
Name: NF16351_high_1
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16351_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 22795496 - 22795830
Alignment:
| Q |
12 |
atgaatacgaaatatatgatggttaagttttaatttaattggtttttcagatctttgcatctgatagcttcttagagcttacagagtattctcgtgaaga |
111 |
Q |
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| T |
22795496 |
atgaatacgaaatatatgatggttaagttttaatttaattggtttttcagatctttgcatctgatagcttcttagagcttacagagtattctcgtgaaga |
22795595 |
T |
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| Q |
112 |
aatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataatctagaaggtttttgcataatgacaaaattttatggtat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795596 |
aatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataatctagaaggtttttgcataatgacaaaattttatggtat |
22795695 |
T |
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| Q |
212 |
ttatttatatatgctatttgatgatacaggtttttgcaaggacctgaaactgatcctgcaacagtgnnnnnnnttagacaggctattgacaatcaaacag |
311 |
Q |
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| T |
22795696 |
ttatttatatatgctatttgatgatacaggtttttgcaaggacccgaaactgatcctgcaacagtgaaaaaaattagacaggctattgacaatcaaacag |
22795795 |
T |
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| Q |
312 |
aagttactgtgcagcttattaactatacaaagagt |
346 |
Q |
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| T |
22795796 |
aagttactgtgcagcttattaactatacaaagagt |
22795830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 40960662 - 40960742
Alignment:
| Q |
54 |
tttttcagatctttgcatctgatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggt |
134 |
Q |
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| T |
40960662 |
tttttcagatatttgcatctgatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggt |
40960742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 40961037 - 40961139
Alignment:
| Q |
239 |
aggtttttgcaaggacctgaaactgatcctgcaacagtgnnnnnnnttagacaggctattgacaatcaaacagaagttactgtgcagcttattaactata |
338 |
Q |
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|||||| |||||||||| ||||||||||| ||||| ||| ||||| |||| |||||||| ||||| |||||||| ||||| || || || |||| |
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| T |
40961037 |
aggtttctgcaaggaccagaaactgatccagcaactgtgagaaaaattagagaggcaattgacaaccaaaccgaagttacagtgcaactgatcaattata |
40961136 |
T |
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| Q |
339 |
caa |
341 |
Q |
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||| |
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| T |
40961137 |
caa |
40961139 |
T |
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