View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16351_high_4 (Length: 237)

Name: NF16351_high_4
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16351_high_4
NF16351_high_4
[»] chr6 (2 HSPs)
chr6 (13-188)||(18738142-18738315)
chr6 (181-222)||(18739414-18739455)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 18738142 - 18738315
Alignment:
Q  13 aaaataaggacgaaatggagagcaaaaccaattacgctagataattgatacttacgctttgaatagcaacaacattggaaacattattccaattccaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18738142 aaaataaggacgaaatggagagcaaaaccaattacgctagataattgatacttacgctttgaatagcaacaacattggaaa-attattccaattccaatt 18738240  T
Q  113 gcagctactaattacaaaacacaaaattctcggtgataataggaagaagaaaaacacataaacgtgaccaaataaa 188  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  18738241 gcagctagtaattacagaacacaaaattctcggtgataataggaagaag-aaaacacatcaacgtgaccaaataaa 18738315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 18739414 - 18739455
Alignment:
Q  181 caaataaataaaggaaatactaacaagtgtcattaagaaact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18739414 caaataaataaaggaaatactaacaagtgtcattaagaaact 18739455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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