View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16351_low_1 (Length: 402)
Name: NF16351_low_1
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16351_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 24722383 - 24722768
Alignment:
| Q |
1 |
gtttctcttcctttccctttgtttatttcgatttcatttattaattaattcatgtgtctgccctgcaggaggttagcctcccgccaccctcgcaaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
24722383 |
gtttctcttcctttccctttgtttatttcgatttcatttattaattcattcatgtgtctgcccagcaggaggttagcctgccgccacgctcgcaaatggc |
24722482 |
T |
|
| Q |
101 |
accgagaacaactgccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgttagaaattctc |
200 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24722483 |
accgggaacaacagccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgttagaaattctc |
24722582 |
T |
|
| Q |
201 |
tataggctt-aagtcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatcattcatttcccatcctaaattcgccaaaaagcacttttgtg |
299 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24722583 |
tataggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattcatctcccatcctaaattcgccaaaaagcacttttgtg |
24722682 |
T |
|
| Q |
300 |
tttcagccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaagacttgccctctctcgact |
385 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24722683 |
tttcaaccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaaggctttccctctctcgact |
24722768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 7175202 - 7175107
Alignment:
| Q |
164 |
tcccactcttccattcgatcttgtgttagaaattctctataggctt-aagtcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatc |
258 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||| | || || |||| ||||| ||| ||||||||||| |
|
|
| T |
7175202 |
tcccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatc |
7175107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University