View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16351_low_2 (Length: 382)
Name: NF16351_low_2
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16351_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 5912575 - 5912221
Alignment:
| Q |
7 |
ccttccaattgcaccttcaggtagtttcttaaattatgtatgttaatgatgttgttatgggcaacaaatttgagtcaagtaaaccaacaagtccgtcctt |
106 |
Q |
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| T |
5912575 |
ccttccaattgtaccttcaggtagtttcttaaattatgtatgttaatgatgttgttatgtgcaacaaatttgagtcaagtaaaccaacaagtccgtcctt |
5912476 |
T |
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| Q |
107 |
gatcttctaacaaatgttatcttattgtagcgtgcttatgagccggcgccacgacatcgtatcatacaatggaggtgatcaagggttcctaaatgagata |
206 |
Q |
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| T |
5912475 |
gatcttctaacaaatgttatcttattgtagcgtgcttatgagccggcgccatgacatcgtatcatacaatggaggtgatcaagggttcctaaatgagata |
5912376 |
T |
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| Q |
207 |
tttgtgtggtggcatagacttccaaggagggtaaactatttaaagaatttttgggccaacacaacagtggaagcaagtgtgaaaaatggattatttgatg |
306 |
Q |
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| T |
5912375 |
tttgtgtggtggcatagacttccaaggagggtaaattatttaaagaatttttgggccaacacaacagtggaagcaagtgtgaaaaatggattatttgctg |
5912276 |
T |
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| Q |
307 |
ctgaccctccaaaactatatgctatccattaccttggtttgaaaccttggcattg |
361 |
Q |
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| T |
5912275 |
ctgaccctccaaaactatatgctatccattaccttggtttgaaaccttggcattg |
5912221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 119 - 361
Target Start/End: Complemental strand, 5908583 - 5908341
Alignment:
| Q |
119 |
aatgttatcttattgtagcgtgcttatgagccggcgccacgacatcgtatcatacaatggaggtgatcaagggttcctaaatgagatatttgtgtggtgg |
218 |
Q |
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| T |
5908583 |
aatgttgttttattgtagtgtgctcatgaacctgcgccacgacatcgtatcatacaacggaggtgatcaagggtttctaaatgagatatttgtgtggtgg |
5908484 |
T |
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| Q |
219 |
catagacttccaaggagggtaaactatttaaagaatttttgggccaacacaacagtggaagcaagtgtgaaaaatggattatttgatgctgaccctccaa |
318 |
Q |
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| T |
5908483 |
cataggcttccaaatcgggtaaactatttaaagaatttttgggccaacacaacagtagaagcaagtgtgaaaaatggcttatttagtgctgaccctccaa |
5908384 |
T |
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| Q |
319 |
aactatatgctatccattaccttggtttgaaaccttggcattg |
361 |
Q |
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| T |
5908383 |
aactatatgctattcactaccttggtttgaaaccttggcattg |
5908341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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