View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16351_low_5 (Length: 290)

Name: NF16351_low_5
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16351_low_5
NF16351_low_5
[»] chr7 (3 HSPs)
chr7 (16-245)||(48648993-48649221)
chr7 (253-290)||(48649362-48649399)
chr7 (20-57)||(48945344-48945381)
[»] chr5 (1 HSPs)
chr5 (20-57)||(14311615-14311652)
[»] chr4 (1 HSPs)
chr4 (20-57)||(44071151-44071188)
[»] chr1 (3 HSPs)
chr1 (20-57)||(1826284-1826321)
chr1 (20-57)||(26096910-26096947)
chr1 (20-57)||(33667504-33667541)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 48648993 - 48649221
Alignment:
Q  16 atttaaaaagaaaaataattatacactcagcgcgccacatcaacttatttgcacagtcaaatgagctaatgatttaaaatcaaagaatcttcaaatggta 115  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  48648993 attttaaaagaaaaataattatacagtcagcgcgccacatcagcttatttgtacagtcaaatgagttaatgatttaaaatcaaagaatcttcaaatgtta 48649092  T
Q  116 aaggaaattaaaattttannnnnnnnactgaggttaaattaaaattcgctcacatggtagtggtgcaaaacaagtgacgaagttgaatgcaattaannnn 215  Q
    ||||||||||||||||||        || |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||        
T  48649093 aaggaaattaaaatttta-tttttttacagaggttaaattaaaattcgctcacatggtagtggtgtaaaacaagggacgaagttgaatgcaattaatttt 48649191  T
Q  216 nnnngaacaaaccaaaataaaatataataa 245  Q
        ||||||||||||||| ||||||||||    
T  48649192 ttttgaacaaaccaaaatagaatataataa 48649221  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 48649362 - 48649399
Alignment:
Q  253 tgagtgtttgaatgcggcaaatagttgaatgcacgtaa 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48649362 tgagtgtttgaatgcggcaaatagttgaatgcacgtaa 48649399  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 48945381 - 48945344
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  48945381 aaaaataaaaataattatacagtcagcgcgccacatca 48945344  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14311615 - 14311652
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  14311615 aaaaataaaaataattatacagtcagcgcgccacatca 14311652  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 44071151 - 44071188
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  44071151 aaaaataaaaataattatacagtcagcgcgccacatca 44071188  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1826284 - 1826321
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  1826284 aaaaataaaaataattatacagtcagcgcgccacatca 1826321  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 26096910 - 26096947
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26096910 aaaaataaaaataattatacagtcagcgcgccacatca 26096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33667504 - 33667541
Alignment:
Q  20 aaaaagaaaaataattatacactcagcgcgccacatca 57  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  33667504 aaaaataaaaataattatacagtcagcgcgccacatca 33667541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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